Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03430 ATGCCAGTTCCACTTGCCCCCTACCCAACTCCACCACCAGCTCCATATACACCACCTCCAACAAATGGTGGACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTTTAATGTATCCAGTTGGAGCTACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACACCAGTGCCTCCGCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCAACAAGCGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTTGCACATGTCAATTGTGGTAACTGCAGGATGCTACTTATGTACCAATATGGAGCAAGATCCGTGAAGTGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACCACTGAGCAGCAGAAGTTCAGCACCTAA 447 0.4743 MPVPLAPYPTPPPAPYTPPPTNGGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTPVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQQKFST 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03430 148 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g03430 148 Pfam LSD1 zinc finger 69 93 IPR005735 -
Trre16g03430 148 Pfam LSD1 zinc finger 30 54 IPR005735 -
Trre16g03430 148 Pfam LSD1 zinc finger 107 131 IPR005735 -
Trre16g03430 148 PANTHER PROTEIN LSD1 16 56 IPR040319 -
Trre16g03430 148 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Trre16g03430 148 NCBIfam zinc finger domain, LSD1 subclass 27 56 IPR005735 -
Trre16g03430 148 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Trre16g03430 148 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03430 Trre-Chr16 36397245 36398597 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trre16g03430 zf-LSD1 8.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03430 - - cave:132174962 265.774