Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03429 ATGACTTACGAGGAAAAACAAGTTTCTTCAATTGACAACATCCATCCAAGGCTGGATGTCTATGTGTGGGACATGGATGAGACCCTTATACTGCTCAACTCTTTACTGAAATCATCATATGCTGAGGCTTTCGATGGTCTGAAGGATGTGCAGAAAGGTGTCGAGCTTGGGAAGATGTGGGAAAATCTCATTTTGAAAGTGTGCGATGATCATTTCTTCTATGAACAAATTGAAAATTACAATCAGCCATTTCTCGATGTTCTGTCCAAATATGATGATGGGAGGGACCTATCTGATTACGACTTCAACCAAGATGAATTAGGCCCCCCACATGATGATGCCATCAAAAGAAAAATTGCATACAGGCATCGAATTATAGCCCAAAAATACTTGCAGGGCTTACATAATATTTTGGATCACGAGACAATAAAAGTATGGGATGATTTGTATGATAAAACTGATGAATATACTGACAAATGGCTTTCATCAGCACGGACCTTTTTGAAGGAGTGTTCCGGTGAAAATAAAGATGCGGTTTCTTCCATTGCTTATGCTAACACAAGCACTGACTCAACTAATGCAAAGCATCAACATGTAAATGTTTTAGTGACATCTGGATCGTTGATACCATCTCTTGTAAAATGCTTGCTCTTTCATCTGGACAACTCAATAACACATGAAAATGTGTATAGCTCTTGGGATGTGGGAAAAGTTCAATGTTTCCGATGGATCAAGGAGCGTTTCAACCATCCCAACGTTCGCTTTTGTGTAATTGGAGATGGGTGGGAAGAGTGTGAAGCTGCCGAAATAATGAGATGGCCATTTGTTAAGATTGACCCTCGGCCAGGAAAACCTCATAGGTTCCCTGGTCTCACATCCAAAACAGTTGGCCACTATTTTTCTGTGGTGTATCCAGACAACGAGAATGATGAAGAATGA 939 0.4036 MTYEEKQVSSIDNIHPRLDVYVWDMDETLILLNSLLKSSYAEAFDGLKDVQKGVELGKMWENLILKVCDDHFFYEQIENYNQPFLDVLSKYDDGRDLSDYDFNQDELGPPHDDAIKRKIAYRHRIIAQKYLQGLHNILDHETIKVWDDLYDKTDEYTDKWLSSARTFLKECSGENKDAVSSIAYANTSTDSTNAKHQHVNVLVTSGSLIPSLVKCLLFHLDNSITHENVYSSWDVGKVQCFRWIKERFNHPNVRFCVIGDGWEECEAAEIMRWPFVKIDPRPGKPHRFPGLTSKTVGHYFSVVYPDNENDEE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03429 312 FunFam Eyes absent homolog 19 288 - -
Trre16g03429 312 PANTHER EYES ABSENT 15 300 IPR028472 GO:0004725
Trre16g03429 312 Gene3D - 19 284 IPR038102 -
Trre16g03429 312 SUPERFAMILY HAD-like 17 286 IPR036412 -
Trre16g03429 312 NCBIfam EYA conserved domain 19 296 IPR006545 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03429 Trre-Chr16 36366440 36368992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03429 18 310 Protein tyrosine phosphatase (PTP) family AT2G35320 60.339 1.44e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03429 - - tpra:123881555 616.305