Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03428 ATGGCTGCTGCATCTGGGATGACTTACGAGGAAAAACAAGTTTCTTCAATTGACAACATCCATCCAAGGCTGGATGTCTATGTGTGGGACATGGATGAGACCCTTATACTGCTCAACTCTTTACTGAAATCATCATATGCTGAGGCTTTCGATGGTCTGAAGGATGTGCAGAAAGGTGTCGAGCTTGGGAAGATGTGGGAAAATCTCATTTTGAAAGTGTGCGATGATCATTTCTTCTATGAACAAATTGAAAATTACAATCAGCCATTTCTCGATGTTCTGTCCAAATATGATGATGGGAGGGACCTATCTGATTACGACTTCAACCAAGATGAATTAGGCCCCCCACATGATGATGCCATCAAAAGAAAAATTGCATACAGGCATCGAATTATAGCCCAAAAATACTTGCAGGGCTTACATAATATTTTGGATCACGAGACAATAAAAGTATGGGATGATTTGTATGATAAAACTGATGAATATACTGACAAATGGCTTTCATCAGCACGGACCTTTTTGAAGGAGTGTTCCGGTGAAAATAAAGATGCGGTTTCTTCCATTGCTTATGCTAACACAAGCACTGACTCAACTAATGCAAAGCATCAACATGTAAATGTTTTAGTGACATCTGGATCGTTGATACCATCTCTTGTAAAATGCTTGCTCTTTCATCTGGACAACTCAATAACACATGAAAATGTGTATAGCTCTTGGGATGTGGGAAAAGTTCAATGTTTCCGATGGATCAAGGAGCGTTTCAACCATCCCAACGTTCGCTTTTGTGTAATTGGAGATGGGTGGGAAGAGTGTGAAGCTGCCGAAATAATGAGATGGCCATTTGTTAAGATTGACCCTCGGCCAGGAAAACCTCATAGGTTCCCTGGTCTCACATCCAAAACAGTTGGCCACTATTTTTCTGTGGTGTATCCAGACAACGAGAATGATGAAGAATGA 957 0.4075 MAAASGMTYEEKQVSSIDNIHPRLDVYVWDMDETLILLNSLLKSSYAEAFDGLKDVQKGVELGKMWENLILKVCDDHFFYEQIENYNQPFLDVLSKYDDGRDLSDYDFNQDELGPPHDDAIKRKIAYRHRIIAQKYLQGLHNILDHETIKVWDDLYDKTDEYTDKWLSSARTFLKECSGENKDAVSSIAYANTSTDSTNAKHQHVNVLVTSGSLIPSLVKCLLFHLDNSITHENVYSSWDVGKVQCFRWIKERFNHPNVRFCVIGDGWEECEAAEIMRWPFVKIDPRPGKPHRFPGLTSKTVGHYFSVVYPDNENDEE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03428 318 Gene3D - 25 290 IPR038102 -
Trre16g03428 318 PANTHER EYES ABSENT 18 306 IPR028472 GO:0004725
Trre16g03428 318 NCBIfam EYA conserved domain 25 302 IPR006545 GO:0007275
Trre16g03428 318 SUPERFAMILY HAD-like 23 292 IPR036412 -
Trre16g03428 318 FunFam Eyes absent homolog 25 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03428 Trre-Chr16 36366422 36368992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03428 24 316 Protein tyrosine phosphatase (PTP) family AT2G35320 60.339 1.45e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03428 - - tpra:123881555 623.624