Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03426 ATGGGTTGCACGGTGAGAGAAAAACACATCAGAGCTAATCGCCGACCACGATCGGCGGCGGCGAAAACTGATTCCGATTCTTCCGATAACAAAGATGCAATTTCCAAATCCATTGCTGAGTCTGGTCTCAAACCTTTCAAATACGATATTTCTTCTTCTAACGGTCTTATTCCTCTTCCTAATCCAAACCCTAATTCGGATGAATCTGGTTGGGGTTATTGTACTGAGGAACAATTGGAAGAGATTCTTTTGAAGAATTTGGAATTTGTTTATAATGAAGCTGTTTCAAAGATTGTTGCTTTAGGTTATGAGGAAGATGCTGCTTTGAAAGCTATATTGAGGAATGGTCATTGTTATGGTGGAATGGATGTTTTGACGAATATTTTGCATAATTCTTTAGCGTATTTGAATAGTAATGGTAGTGTTGTTTCTATTGGTGCTGGTTTTGGTGGTGGTGGTGGTGATGTTAGTAATGGGAATTCTGATGAGGCTGAGCTTGTTTTCTCTGATTTGAGGCAGTTAGAGGAATACTCTTTGGCTGGTATGGTGTGTTTGTTGCAACAGGTTAGACCTAATTTGAGTAAAGGTGATGCAATGTGGTGTTTACTTATGAGTGATCTTCATGTGGGGAAAGCTAGTACTATGGAGATTCCTGTGCCAGGGAGTGGGGGTGCTACTCGCACGCCTGCTATTGTTGAGTCTGGTCAGTCGGGTCGTGGTTCGGTTGGTGTTAGGGCTCCTCCCTTGTGTAGGTTTCATGGTGGGTGGGGATTTGGAAATGGGGATTATCCTGTGAATGGGATATTTTCGTGTGGTCCGGATTTGCAAAGAGAGATTGAATTCCCGAAAAGATTTGATCTTTCGCCTACAATGAAAGTCTTGTTGAAGAGAAATGTTACAATGTTTGCTGCTGGTTTTAGGGCAAACACCAAACAGCTGCAGACACAGGGGAAGGTGAAGGCCAACGTTCCCGGTAGTCGTAGTGCTGTCTCTGGTTTGGATTCTCCTGTTGTGTCCTCCGGGGCTGAAGTCACGGCTGATCAGTGTGTACATTCTCGGTTTCCTGATAACCAAGATGCTGTGAACTCGGTGCTGAGTAAATTTCGTGACTTGAATCTTGATGAGAATTTGGAGTTTGTGGCAGAGGATCAGAAGGATGAGGTGATAGTAAGTATATTTCATCAGATAAAGGATTTGGAGAAACAGGCTAAGGAGCGAAAAGAATGGGCTCATCAGAAAGCAATGCAAGCGGCAAAGAAGCTAAGCAGTGATTTGACTGAGCTGAAAACGTTACGGATGGATAGAGAGGAAACTCAGAAATTGAAGAAAGGGAAACAAGCACTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCTCTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCAAATGGAGCTGTGAGAAGATTAGAGACGGAGAATGCAGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCGAAAAGGGAGAAAAAATGGTTAAAGAAACTACTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAAAAGGAGATTTCCAATGAGAAAGAGAAGATATCGGAGGCACAAGAAGTGTTGGCTCAGAATACACAGCGTCAAAAAGAAGCCAAGGTTAAATGGAAGGAGGAGTTGAAGGGTCAAGAAGATGCCTTGGCACTAGTTGAGGAGGAGCGCCGTGCCAAGGAAGCAGCTGAATCAAACAATAAGAGGGGGTTTGAGGCTTTGCGTTTGAAGATAGACATAGATTTCCAGCGCCACAAGGATGATCTAAGTAGACTTGAGCATGATCTTTCACGCCTTAAAGCATCTGTTCAATCTGCTGTGCTGCACCATCAATCAAATACTACACCTATAAGTGACTTTGAAGGTACAAAGCCCCAAAGAGAGACAATTGCTAAGCTGCTTCTGGAATTGGATAACCTGGAGGATTTATCAGAAAGTGAAGTTAGTAACAACAGAGAATGCATTATTTGCATGAAAGATGAAGTCTCCATTGTTTTCTTGCCATGTGCTCACCAAGTCATGTGTGCTAAATGCAGCGATGAGTATGGGAAAAAGGGCAAGGTTGCTTGTCCTCGATGCCGAGTTCAAATACAACAGAGAATCCGTGTATTTGGGGCATGTTCTTAG 2193 0.4337 MGCTVREKHIRANRRPRSAAAKTDSDSSDNKDAISKSIAESGLKPFKYDISSSNGLIPLPNPNPNSDESGWGYCTEEQLEEILLKNLEFVYNEAVSKIVALGYEEDAALKAILRNGHCYGGMDVLTNILHNSLAYLNSNGSVVSIGAGFGGGGGDVSNGNSDEAELVFSDLRQLEEYSLAGMVCLLQQVRPNLSKGDAMWCLLMSDLHVGKASTMEIPVPGSGGATRTPAIVESGQSGRGSVGVRAPPLCRFHGGWGFGNGDYPVNGIFSCGPDLQREIEFPKRFDLSPTMKVLLKRNVTMFAAGFRANTKQLQTQGKVKANVPGSRSAVSGLDSPVVSSGAEVTADQCVHSRFPDNQDAVNSVLSKFRDLNLDENLEFVAEDQKDEVIVSIFHQIKDLEKQAKERKEWAHQKAMQAAKKLSSDLTELKTLRMDREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKREKKWLKKLLAWEKQKAKLQKEISNEKEKISEAQEVLAQNTQRQKEAKVKWKEELKGQEDALALVEEERRAKEAAESNNKRGFEALRLKIDIDFQRHKDDLSRLEHDLSRLKASVQSAVLHHQSNTTPISDFEGTKPQRETIAKLLLELDNLEDLSESEVSNNRECIICMKDEVSIVFLPCAHQVMCAKCSDEYGKKGKVACPRCRVQIQQRIRVFGACS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03426 730 MobiDBLite consensus disorder prediction 17 33 - -
Trre16g03426 730 PANTHER OS05G0141500 PROTEIN 1 725 IPR046934 -
Trre16g03426 730 Coils Coil 604 624 - -
Trre16g03426 730 SMART ring_2 676 715 IPR001841 -
Trre16g03426 730 Pfam Zinc finger, C3HC4 type (RING finger) 673 721 - -
Trre16g03426 730 Coils Coil 512 553 - -
Trre16g03426 730 Coils Coil 456 497 - -
Trre16g03426 730 CDD RING-HC_MIP1-like 674 725 - -
Trre16g03426 730 Pfam Family of unknown function (DUF6592) 86 213 IPR046527 -
Trre16g03426 730 SUPERFAMILY RING/U-box 658 722 - -
Trre16g03426 730 Coils Coil 558 588 - -
Trre16g03426 730 MobiDBLite consensus disorder prediction 1 33 - -
Trre16g03426 730 ProSiteProfiles Zinc finger RING-type profile. 676 716 IPR001841 -
Trre16g03426 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 727 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03426 Trre-Chr16 36302249 36308019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03426 676 726 C3H Transcription Factor Family AT1G73950 43.137 4.23e-08 54.3