Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03422 ATGGCAGAGACATCACTGCCACCAGGTTTTCGTTTCCGTCCAACCGATGAAGAACTGATTGGATACTATCTTAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGATGTTATCCCAGTGATTGATTTTTACAAATTTGATCCATGGCAGTTACCTGAGAAATCATTTCTACCAAAACGAGATTTAGAATGGTTTTTCTATTGTCCGCGAGATCGAAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTACTGGAAAGCCACCGGAAAAGAGAGAGAGATTGTGTCCGAGTGTGCTTCATCCACCATCACAGGTTACTGCAAAACACTTGTTTTCTATATTGGAAGGGCCCCTTTAGGGGATAGAACTAATTGGATCATGCATGAGTATCGCCTCGCCGATGATTTTAACCAAGACTTTAAGGGTGTTTTTGCTTTGTGTCGAGTTATTAAAAAGAATGAGAAGAGCAAGAGGGCAGAAACAAGTTCCAATGATGTTACTTCTCAAACAAGTTACCAAAATAATGACAGTGGATCACAAAATATGGCTCCAATTGCTGAGTTTAACAATGTATCAATAGAAACTAATCCTTCAAACTTCTGGATCTCGCCTGATATGATTCTTGATTCTTCAAAGGAGTATACTCAAGTACAAGATGCAGTGTCTGAATATTTTCCAAGGTGTGACTCGCCACGACAATCATCAGAACATACAACAATTTCACCTAGTTTATCATACTCAAATTTTAATGGTGAAATTGAATTTTCTGATAATACAAGTCAAATTGGATGCATGTCACCTTACTCAAGTCAGGGAAATTTCATGGACTATTATGGAAATTGGAATGTTCCTTATGAAGTTTATGATCAGATTAACTCTGTCTCATATCAAGAGCCTTTCTAA 915 0.3781 MAETSLPPGFRFRPTDEELIGYYLKRKVEGLEIELDVIPVIDFYKFDPWQLPEKSFLPKRDLEWFFYCPRDRKYPNGSRTNRATKAGYWKATGKEREIVSECASSTITGYCKTLVFYIGRAPLGDRTNWIMHEYRLADDFNQDFKGVFALCRVIKKNEKSKRAETSSNDVTSQTSYQNNDSGSQNMAPIAEFNNVSIETNPSNFWISPDMILDSSKEYTQVQDAVSEYFPRCDSPRQSSEHTTISPSLSYSNFNGEIEFSDNTSQIGCMSPYSSQGNFMDYYGNWNVPYEVYDQINSVSYQEPF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03422 304 MobiDBLite consensus disorder prediction 166 185 - -
Trre16g03422 304 MobiDBLite consensus disorder prediction 161 185 - -
Trre16g03422 304 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Trre16g03422 304 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Trre16g03422 304 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 213 - -
Trre16g03422 304 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Trre16g03422 304 FunFam Nac domain-containing protein 86 15 159 - -
Trre16g03422 304 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03422 Trre-Chr16 36292551 36294019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03422 1 263 NAC Transcription Factor Family AT4G17980 57.875 9.15e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g03422 NAM 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03422 - - mtr:11415472 504.212