Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03411 ATGGGAAGTGGAGTTTCGTCCCTCTGTTCTTGCTTTGAACCGGTTCACCGGACCAAAAAAAACCATAACCAAAACGTTATTTTCACTCAAGAAGAACCATTGGATGAAACCCTAGGTCACTCTTTCTGTTACGTTAGATCTTCAGCTCGTTTTCTCTCTCCAACTCACTCCGATCGGTTTCTCTCTCCTTCAACTTCTCTCCGGTTTTCACCAACTCACGAATCGCTACCTAAAACCCGACCCGATTTTCCTGAAACTACTTTCAAAGCTATTTCTGGTGCTTCTGTTAGTGCTAATAGTTCTGTTCCCAAAACGGTTATTCAGTTAGAGGAAGAATCCTCAACCTCCGCCGCCGCCGTTTTTGATTCTTCCGTCAAGGGTACTATTGTCAATGGCTTTGAAAGTACGTCGTCGTTTTGTGCTCTTCCGCTTCAGCCTGTTCCCAGAGGTGCTGAGCTTTTTGAAGGGAGTGGTTTTTTTCTCTCCGGTCCGTTTGAGAGTGGCGCGCATTCCGGACCGATTAACGCAGGTGCTGGTGTTGACTCTGGTGTCTCCGGCGGGAGAGATGTTCCTTTCTCGGCTCCGTTAGGGGGGATGTATGGAAGGAAGAAAGGTGTGTCGGGGTTTCGGAAGGCGTTTCAACGGAAGGTGTCGGACAAGAAGCGGCCGTGGGTTGTGCCAGTGTTGAATTTTGTTGGGAGGAAGGAAGTTCCGGCGAGTGAAGGGAGGGAGAAGCCGGTGGAGGTGAAGAGTGAGAGCAATGTGCAGTGGATGTTAGGGAAGGCCGGTGAGGATCGGGTTCATGTGGTGGTTTCGGAGGAGCAGGGGTGGTTGTTTGTTGGGATTTACGATGGTTTTAATGGACCCGATGCGCCGGAGTTTTTGATGGGGAATATGTACCGTGCTGTTTACAATGAGCTTCAGGGTTTGTTCTGGGAAGTTGAAGAAACAATGGAGAGTAATCCTGTTGAGGTGAAAAACAAAACGGAGGGAGAAAATTCCGGTGCTGGTTTGGTGGATGTGGTTCGCGAGGCGGAAACTGGAACTGTGAGTAAACGGCGTAGGTTGTGGGAGTTACTGGCAGAAGATCCTGAAGATGGACTTGATCTTTCTGGGTCTGATAGGTTTGCGTTTTCCGTTGACGACGCACTCAGTGTTAGCAATGCCAATGCAGGTTCTGCCATTAGTAGACGGTGGCTTTTGCTGTCCAAACTGAAGAATGGGTTGTCAAAGCATAGGGAGGGTAATGGTAGGAAGTTGTTGCCGTGGAGTTTAGGGAATGAGGAAGAGAAAGAAGAAAAGTCTGAGGTGGAAAACAAGCCTTCTGCTTCTGGTACTGGCAGTGGTGGAGGGAGGAGACGGAAATTGGGTCCGGTCGATCATGATTTGGTTTTGAATGCAATGTCTCGGGCGCTTCAAGTGACAGAGCTTGCATATTTGGATATGACGGATAAGCATTTGGATACAAATCCTGAACTTGCTTTGATGGGTTCTTGTCTGTTGGTTGTTTTGATGAGGGATGAGGATGTGTATGTTATGAATGTTGGGGATAGTCGTGCAATTGTTGCGCATTATGAGCCCAAGGAGGGTCAGGATACTTCCAACGCGGAACCTGCAAGCAAGGAACAAGATGTTGGTGTTGGTTCCAGCAGTGGGAGCATAGTTGAGGAGTTATTAGCTTTAGATGGTACTCAAACTGAAGGTGCAATGAAGGTAGGAGGGAGTCAGGGTCCTGCTCAAGAAATGAGGTTGGCGGCATTGCAGCTGTCTACTGACCACAGCACCAGCATTGAAGAAGAAATTATTAGAATTAAAAATGAGCATCCTGATGATCCCCATTGTATAGTCAATGATAGAGTTAAAGGGCGTCTTAAGGTCACCAGAGCTTTTGGGGCAGGATTTTTGAAACAGCCGAAGTTGAATGCTGCAGTACTGGAAATGTTTCGTAATGAATACATTGGAACTGCCCCATATGTATCTTGCTTCCCTTCAGTACGTCACCGTAGATTATGCCCAAGGGACCAGTTCTTGATCCTCTCATCTGATGGTTTGTATCAATACCTAAACAATGAAGAAGTTGTTTCTCAAGTTGAGAGCTTCATGGAAAAGTTTCCAGAAGGTGATCCCGCCCAACATTTAATAGAAGAGCTGCTCCTCCGTGCAGCCAAAAAAGCTGGATTAGATTTTCATGAATTGCTGGATATCCCGCAAGGAGATCGGAGGAAGTATCATGATGATGTTACTGTTATGGTGATATCACTTGAAGGAAGAATATGGAAATCATCAGGCAAATATCTATGA 2301 0.4676 MGSGVSSLCSCFEPVHRTKKNHNQNVIFTQEEPLDETLGHSFCYVRSSARFLSPTHSDRFLSPSTSLRFSPTHESLPKTRPDFPETTFKAISGASVSANSSVPKTVIQLEEESSTSAAAVFDSSVKGTIVNGFESTSSFCALPLQPVPRGAELFEGSGFFLSGPFESGAHSGPINAGAGVDSGVSGGRDVPFSAPLGGMYGRKKGVSGFRKAFQRKVSDKKRPWVVPVLNFVGRKEVPASEGREKPVEVKSESNVQWMLGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNMYRAVYNELQGLFWEVEETMESNPVEVKNKTEGENSGAGLVDVVREAETGTVSKRRRLWELLAEDPEDGLDLSGSDRFAFSVDDALSVSNANAGSAISRRWLLLSKLKNGLSKHREGNGRKLLPWSLGNEEEKEEKSEVENKPSASGTGSGGGRRRKLGPVDHDLVLNAMSRALQVTELAYLDMTDKHLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAHYEPKEGQDTSNAEPASKEQDVGVGSSSGSIVEELLALDGTQTEGAMKVGGSQGPAQEMRLAALQLSTDHSTSIEEEIIRIKNEHPDDPHCIVNDRVKGRLKVTRAFGAGFLKQPKLNAAVLEMFRNEYIGTAPYVSCFPSVRHRRLCPRDQFLILSSDGLYQYLNNEEVVSQVESFMEKFPEGDPAQHLIEELLLRAAKKAGLDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03411 766 MobiDBLite consensus disorder prediction 528 548 - -
Trre16g03411 766 MobiDBLite consensus disorder prediction 410 439 - -
Trre16g03411 766 Gene3D - 236 761 IPR036457 -
Trre16g03411 766 MobiDBLite consensus disorder prediction 410 457 - -
Trre16g03411 766 CDD PP2Cc 460 754 IPR001932 -
Trre16g03411 766 SUPERFAMILY PP2C-like 260 755 IPR036457 -
Trre16g03411 766 PANTHER PROTEIN PHOSPHATASE 2C 248 753 IPR015655 GO:0004722|GO:0006470
Trre16g03411 766 SMART PP2C_4 248 752 IPR001932 -
Trre16g03411 766 ProSiteProfiles PPM-type phosphatase domain profile. 248 754 IPR001932 -
Trre16g03411 766 MobiDBLite consensus disorder prediction 533 548 - -
Trre16g03411 766 Pfam Protein phosphatase 2C 587 718 IPR001932 -
Trre16g03411 766 Pfam Protein phosphatase 2C 472 524 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03411 Trre-Chr16 35896090 35900574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03411 1 766 PP2C-type Phosphatase Gene Family AT2G35350 55.130 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03411 - - mtr:11415473 1227.62