Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03397 ATGGTTTGTACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTCCTTCAGGAAGACAACACTTCTGCTTCTGAGATAAGAACAAAGCTTGAGGCCATGGACTATAATGTTTCTACATTCTGTGATGTGAACGAAGCCTTATCAGCAATCTCAAGTAGACCTGAAGGCTTCCATATTGCCATAGTGGAGGTGAGTTCAAGCAGTTGCGAGGGAGGTTACAAATTTCTTGAGAATGCCAAGGACTTGCCGACCATTATGACTTCAAACAACGATTGTCTGAACACCATGATGAAGTGCATAGCGCTTGGAGCAGTGGAGTTCCTCAGCAAACCACTATCCGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGTAAGTGAGCTGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGTCTCCATTTTGCAGCTCCAAACGGACAACAAACAACACGAAAGTAGAGCCTCAGTTGAGTTAGAGAAAGTATCCCAGTTTTCTGACGAAGACCTTGAGCATTATCCGGCTCCTTCAACCCCACAATTGAAACAGGTGGAGAGATTACTAGATGATGGGGATTGTCAAGAGCAGACTAATTGCTCTACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATTCGTCGAAACTACTTGTGAAAATATGAATGCTGAAAGTACTCCTCAACAAAGGAAATCTGAAGTTACTCCGGTTCAAAAGGAAGCGGAGGAATTTGCCGACGCTTCTAAGTGTGGGAGTGTTGTTTCACCACATCCACAAAATGAGAAGGTTTTCAATAATAGTGAAAGTAATACAACGTCTGCAAATAAAGTAGGTGTTCGTAGTCATAAATGCGAGATAAAATCTAATCGGAAGAAAATGAAAGTAGACTGGACGGCTGAGCTACACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCACGCAATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTGCCGAAGCAAGAAGATCGGAAATGGCTAAATCAAAGAGATCCAACGCAAAGGAGCTATTGTATTCAAAGGCCAATTATGCCTAGTCCTCCATCATATTATTCTAACCATACCCTTCCTCCACCTCCTTTATATCCTATGTGGGGACAACCTGGAACTCAAACGGCTGGAATGCAGGTTTGGAGCCCTTCTGCTTATCCCTTGTGGCAGCCTGCAGAAGCTTGGCATTGGCAACCATTTCCGGCGATGCATGCAGATACATGGGGCACCCCGGTGTTACCACCACCTCAACCTCCTTGCTATTCCTATTCTCAGAATACACCTGCAGTGAGTAATGCTAATGCAGTAGATTACATGTTTGACATGCCCCAAAGTTCCTTTGACGATTATCCGGCAGAGGAGGTTATTGACAATGTTGTGAAGGAGGCAATAAGTAAGCCATGGCTACCTTTGCCGATAGGCCTCAAACCTCCTTCCACGGATACTGTGTTGGCTGAGCTTTCTAGGCAAGGCATTTCCAACATCCCTCCAACCAACAATGGTTCTATTCCCAATTGA 1656 0.4372 MVCTANDLQEWKDFPKGLKVLLQEDNTSASEIRTKLEAMDYNVSTFCDVNEALSAISSRPEGFHIAIVEVSSSSCEGGYKFLENAKDLPTIMTSNNDCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGVSELSESLKPVKESVVSILQLQTDNKQHESRASVELEKVSQFSDEDLEHYPAPSTPQLKQVERLLDDGDCQEQTNCSTEKESGEHDGESKFVETTCENMNAESTPQQRKSEVTPVQKEAEEFADASKCGSVVSPHPQNEKVFNNSESNTTSANKVGVRSHKCEIKSNRKKMKVDWTAELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKQEDRKWLNQRDPTQRSYCIQRPIMPSPPSYYSNHTLPPPPLYPMWGQPGTQTAGMQVWSPSAYPLWQPAEAWHWQPFPAMHADTWGTPVLPPPQPPCYSYSQNTPAVSNANAVDYMFDMPQSSFDDYPAEEVIDNVVKEAISKPWLPLPIGLKPPSTDTVLAELSRQGISNIPPTNNGSIPN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03397 551 MobiDBLite consensus disorder prediction 263 292 - -
Trre16g03397 551 FunFam Two-component response regulator-like APRR2 17 141 - -
Trre16g03397 551 MobiDBLite consensus disorder prediction 269 292 - -
Trre16g03397 551 Pfam Myb-like DNA-binding domain 311 360 IPR001005 -
Trre16g03397 551 Pfam Response regulator receiver domain 24 126 IPR001789 GO:0000160
Trre16g03397 551 NCBIfam myb-like DNA-binding domain, SHAQKYF class 308 363 IPR006447 GO:0003677
Trre16g03397 551 SUPERFAMILY CheY-like 16 133 IPR011006 -
Trre16g03397 551 MobiDBLite consensus disorder prediction 209 228 - -
Trre16g03397 551 Gene3D - 304 366 - -
Trre16g03397 551 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 544 IPR044825 GO:0003700|GO:0045893
Trre16g03397 551 Gene3D - 18 142 - -
Trre16g03397 551 ProSiteProfiles Response regulatory domain profile. 18 131 IPR001789 GO:0000160
Trre16g03397 551 FunFam Two-component response regulator 304 367 - -
Trre16g03397 551 SUPERFAMILY Homeodomain-like 307 365 IPR009057 -
Trre16g03397 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 305 364 IPR017930 -
Trre16g03397 551 SMART REC_2 18 127 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03397 Trre-Chr16 35581722 35586432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03397 1 548 Response Regulator Gene Family AT4G18020 47.774 2.95e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre16g03397 Response_reg 7.8e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03397 - - psat:127074291 892.108