Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03382 ATGGCAACAGATATACAGCTCTCTCACTATATGACTAAGAGAACCAAGAAGGCTGGCATTGTTGGCAAATATGGTACCCGTTATGGTGCAGTTTCCGTAAGCAGATTAAGAAGATGGAAGTTAAGTCAGCACAGCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGAAAAGCTGTAGGAATATGGGGATGTTTTTGCTTATTGGAGAGGAAGGTTTTGCAGGGCCATTCACCATTTAGACAATTGGCCAATAGAAATGTTATCTCAATTGATGAATATGCATCATGCTTTGAAAACATTGATCCATTGGCACCTTACAAGAAATGGACCAAGCTGGACGCTGCTAAGAATCCCAAGTTTGATCAGAGTGGGCCACAAATTGATATCTTCTCTGAAAGGGTTCAAGCAGCATTCATAGTTAGTGATCCTGTTGATTGGAGCAGGGACATACAGATAAGCCTTATGATATACTGGTGCCTAACACTGTTAGGTACCCGTTATGGTGCTAGTTTGCGTAAGCAGATTAAGAAGATGGAAGTTAGTCAGCACAGCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGAAAAGCTGTAGGAATATGGGGATGTAAGGATTGCGGTAAAATGAAAGCATGGGGAGCTTACACTTTGAAATCCTCAAGGGAAACCAACAGGAATTATTGGCCATCTCGTGCTGTCACATTCCTAGAGAACCATGATACAGGGTCCACACAAGTACGTGATCTGGTTCTTTTTCTGTCAACGTATGATGCATTAGATATCAACATTGGTGATTATGTGGAATTTATCCCATTATCACCTTCACCTTGTGGCCACTGGACGTTCGCAAGAGATAAGCTCATGCAGGGATATACATATATCTTGACGCATCCTGGAACTGTCAGAGATCCTGTTGCTGAAAGAAAACGAAGAGAAATAAGAAGAGTCCTCTGGACGAGGCAGAAGAAGAGTACACGGGAGGAGGAAGTGGAAGAACTACACAGTTTTATATACGCTCATCATGTGTTTGATAAAATGTTGATGCCGATGCTCATAAACATTAGCATCACCAAAGCTGATTTTCTACTGTGTTATGCTTGA 1119 0.4102 MATDIQLSHYMTKRTKKAGIVGKYGTRYGAVSVSRLRRWKLSQHSKFFCEFCGKYAVKRKAVGIWGCFCLLERKVLQGHSPFRQLANRNVISIDEYASCFENIDPLAPYKKWTKLDAAKNPKFDQSGPQIDIFSERVQAAFIVSDPVDWSRDIQISLMIYWCLTLLGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKMKAWGAYTLKSSRETNRNYWPSRAVTFLENHDTGSTQVRDLVLFLSTYDALDINIGDYVEFIPLSPSPCGHWTFARDKLMQGYTYILTHPGTVRDPVAERKRREIRRVLWTRQKKSTREEEVEELHSFIYAHHVFDKMLMPMLINISITKADFLLCYA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03382 372 SUPERFAMILY Zn-binding ribosomal proteins 167 226 IPR011332 GO:0006412
Trre16g03382 372 Gene3D Glycosidases 276 332 - -
Trre16g03382 372 SUPERFAMILY (Trans)glycosidases 221 307 IPR017853 -
Trre16g03382 372 Gene3D - 11 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Trre16g03382 372 Gene3D - 165 231 IPR011331 GO:0003735|GO:0005840|GO:0006412
Trre16g03382 372 SUPERFAMILY Zn-binding ribosomal proteins 20 67 IPR011332 GO:0006412
Trre16g03382 372 Pfam Ribosomal L37ae protein family 167 227 IPR002674 GO:0003735|GO:0005840|GO:0006412
Trre16g03382 372 Pfam Ribosomal L37ae protein family 14 67 IPR002674 GO:0003735|GO:0005840|GO:0006412
Trre16g03382 372 PANTHER ZGC:171772 167 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03382 Trre-Chr16 34995388 35003482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03382 11 67 Cytoplasmic Ribosomal Protein Gene Family AT3G60245 73.684 2.73e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03382 K02921 - cam:101498208 138.272