Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03363 ATGGCAGATACTTCATGCACCGACTGCTTTGTTCAATCTCGTGCAACATTTTACCCAAACTCTGACGAAAAAGGCACAGATGCTGGTGCATGTGGATTTGGGTCCTTTGGTGCTACCATTAATGGGGGAGATGTATCGGCTGCATCTAGTCTTTATCGAGATGGAGTTGGCTGTGGCGCTTGTTACCAGGTGAGGTGTACCAACAGTGCTTATTGCTCAGGCAACGGTGTCACTATAGTTTTAACTGACCAAGGCTCAGGTGATAACACTGATTTCATTCTTAGCCAACGAGCATTTGGTGGGATGGCTCAGAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGTGTAGCTGATATTGAATACAGACGTGTTTCATGTAACTACCCAAACAAAAACATTACAATTAAGATCGACCAAAGCAGCAGCAACCCTCATTACTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGGAGAGACATAACTGCCGTGCAGCTCTGTGAGACTGAGAACTTTGTCTGCAAGTTACTGGATCGGAATCATGGCGCTGTCTGGACTACTACGTCTCCACCAAGTGGACCATTGTCTTTAAGGATGTTGTTTAGTACTGACGATGGAGACGATACATGGATTGTTCCGGTTAATAACATACCAGAAGACTGGAAGGCTGGAGAAACATATGACTCAGGAGTTCAAGTAGACCAGTAG 708 0.4492 MADTSCTDCFVQSRATFYPNSDEKGTDAGACGFGSFGATINGGDVSAASSLYRDGVGCGACYQVRCTNSAYCSGNGVTIVLTDQGSGDNTDFILSQRAFGGMAQNKDAAASLLALGVADIEYRRVSCNYPNKNITIKIDQSSSNPHYLAFVLWFQQGRRDITAVQLCETENFVCKLLDRNHGAVWTTTSPPSGPLSLRMLFSTDDGDDTWIVPVNNIPEDWKAGETYDSGVQVDQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03363 235 CDD DPBB_EXLB_N 11 127 - -
Trre16g03363 235 PANTHER EXPANSIN-B3 12 232 - -
Trre16g03363 235 PRINTS Expansin/Lol pI family signature 9 24 IPR007118 GO:0005576
Trre16g03363 235 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Trre16g03363 235 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Trre16g03363 235 PRINTS Expansin/Lol pI family signature 115 131 IPR007118 GO:0005576
Trre16g03363 235 Pfam Lytic transglycolase 48 121 IPR009009 -
Trre16g03363 235 Gene3D - 129 233 IPR036749 -
Trre16g03363 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 146 229 IPR007117 -
Trre16g03363 235 SUPERFAMILY PHL pollen allergen 132 229 IPR036749 -
Trre16g03363 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 132 IPR007112 -
Trre16g03363 235 Pfam Expansin C-terminal domain 134 218 IPR007117 -
Trre16g03363 235 Gene3D - 2 128 IPR036908 -
Trre16g03363 235 SUPERFAMILY Barwin-like endoglucanases 6 131 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03363 Trre-Chr16 31262071 31263488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03363 7 231 Expansin Gene Family AT4G17030 45.133 4.39e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03363 - - gmx:100794009 417.927