Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03362 ATGGCCCTCTCTCTTTTGTGTATTGTTCTCCTTGCCACCTTTCTTTTCATGCAAACTATGGCAGATACTTCATGCACCGACTGCTTTGTTCAATCTCGTGCAACATTTTACCCAAACTCTGACGAAAAAGGCACAGATGCTGGTGCATGTGGATTTGGGTCCTTTGGTGCTACCATTAATGGGGGAGATGTATCGGCTGCATCTAGTCTTTATCGAGATGGAGTTGGCTGTGGCGCTTGTTACCAGGTGAGGTGTACCAACAGTGCTTATTGCTCAGGCAACGGTGTCACTATAGTTTTAACTGACCAAGGCTCAGGTGATAACACTGATTTCATTCTTAGCCAACGAGCATTTGGTGGGATGGCTCAGAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGTGTAGCTGATATTGAATACAGACGTGTTTCATGTAACTACCCAAACAAAAACATTACAATTAAGATCGACCAAAGCAGCAGCAACCCTCATTACTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGGAGAGACATAACTGCCGTGCAGCTCTGTGAGACTGAGAACTTTGTCTGCAAGTTACTGGATCGGAATCATGGCGCTGTCTGGACTACTACGTCTCCACCAAGTGGACCATTGTCTTTAAGGATGTTGTTTAGTACTGACGATGGAGACGATACATGGATTGTTCCGGTTAATAACATACCAGAAGACTGGAAGGCTGGAGAAACATATGACTCAGGAGTTCAAGTAGACCAGTAG 765 0.4471 MALSLLCIVLLATFLFMQTMADTSCTDCFVQSRATFYPNSDEKGTDAGACGFGSFGATINGGDVSAASSLYRDGVGCGACYQVRCTNSAYCSGNGVTIVLTDQGSGDNTDFILSQRAFGGMAQNKDAAASLLALGVADIEYRRVSCNYPNKNITIKIDQSSSNPHYLAFVLWFQQGRRDITAVQLCETENFVCKLLDRNHGAVWTTTSPPSGPLSLRMLFSTDDGDDTWIVPVNNIPEDWKAGETYDSGVQVDQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03362 254 Gene3D - 148 252 IPR036749 -
Trre16g03362 254 Gene3D - 16 147 IPR036908 -
Trre16g03362 254 PANTHER EXPANSIN-B3 11 251 - -
Trre16g03362 254 Pfam Expansin C-terminal domain 153 237 IPR007117 -
Trre16g03362 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Trre16g03362 254 CDD DPBB_EXLB_N 30 146 - -
Trre16g03362 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Trre16g03362 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Trre16g03362 254 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Trre16g03362 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Trre16g03362 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trre16g03362 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Trre16g03362 254 Pfam Lytic transglycolase 67 140 IPR009009 -
Trre16g03362 254 SUPERFAMILY Barwin-like endoglucanases 15 150 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03362 Trre-Chr16 31262071 31263545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03362 9 250 Expansin Gene Family AT4G17030 43.852 9.57e-63 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03362 - - gmx:100794009 442.195