Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03340 ATGAAGTGTTTCTTCTTCAAAGAAAAATGCAAATCCGCTCCAGAATTACAGAACAAGAAGAACCCCGCTTTCAACCGCGCAACAAACTCAACTGGCTCTATATCTTCTCCACGGAGTGTGAATGATTTGTATAGAGAAAAAGAGCATAGTTTTAGAGTTTTCAGTCTTCAAGAATTGAGAGATGCTACCAATGGTTTCAATAGGATGCTCAAAATTGGTGAAGGAGGTTTTGGAAGTGTTTATAAAGGATCAATTTTACCACCAAATGGACAAGGTGATCCAATTATAGTTGCTATCAAAAGGCTTAACACTCGTGGATTTCAAGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATATTGCTCTGTAGACGGAGAAAGAGGAATCCAACGGCTATTGGTGTATGAGTTCATGCCAAACAGGAGCTTGGAAACTCACCTTTTCAGTAAAACTTTACCAACCCTTCCATGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTGAAGGATTAGCTTATCTACACGAGGGATTGGAGATACAGGTGATCTACCGAGATTTCAAATCTTCAAATGTCTTATTGGATGAGGATTTTCATCCGAAGCTCTCAGATTTTGGTCTTGCAAGGGAAGGGCCACAAGGGGATCAGACTCATGTATCTACTGCGGTAGTTGGGACACAAGGATATGCCGCGCCAGAGTATATTGAAACAGGTCATCTCAAAGTTCAGAGTGACATGTGGAGTTTTGGGGTCGTACTCTACGAAATCCTCACTGGAAGACGATCATTAGAAAGAAACCGTCCAACAGCTGAACAGAAGCTATTAGATTGGGTTAAACAGTATCCAGCTGACAGTAACAGATTCAGCATAATTATGGACCAGCGTCTTAGGAACCAATATCCGATCGCTGCAGCTCGCAAAATAGCAAAGTTAGCCGATAGTTGCTTGAAGAAGAATGCAGAAGATAGACCATCTATGAATCAGATAGTGGAAGGGTTGAAACAAGCATTGCAATATTCGGAAATGTCAAACACTCCTCAAGATAATGCTGAATCGTCTCGGTCTAAATTGGTTCAAAGAAGTAAATAG 1131 0.4085 MKCFFFKEKCKSAPELQNKKNPAFNRATNSTGSISSPRSVNDLYREKEHSFRVFSLQELRDATNGFNRMLKIGEGGFGSVYKGSILPPNGQGDPIIVAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLETHLFSKTLPTLPWKTRLEIMLGAAEGLAYLHEGLEIQVIYRDFKSSNVLLDEDFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSNRFSIIMDQRLRNQYPIAAARKIAKLADSCLKKNAEDRPSMNQIVEGLKQALQYSEMSNTPQDNAESSRSKLVQRSK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03340 376 SUPERFAMILY Protein kinase-like (PK-like) 48 346 IPR011009 -
Trre16g03340 376 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 152 361 - -
Trre16g03340 376 PANTHER OS01G0588500 PROTEIN-RELATED 34 351 - -
Trre16g03340 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Trre16g03340 376 MobiDBLite consensus disorder prediction 354 368 - -
Trre16g03340 376 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03340 376 MobiDBLite consensus disorder prediction 354 376 - -
Trre16g03340 376 CDD STKc_IRAK 72 349 - -
Trre16g03340 376 ProSitePatterns Protein kinases ATP-binding region signature. 72 100 IPR017441 GO:0005524
Trre16g03340 376 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Trre16g03340 376 Pfam Protein tyrosine and serine/threonine kinase 71 346 IPR001245 GO:0004672|GO:0006468
Trre16g03340 376 Gene3D Transferase(Phosphotransferase) domain 1 152 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03340 Trre-Chr16 30426970 30430305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03340 3 347 Glycoside Hydrolase AT3G07070 43.137 1.82e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g03340 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03340 - - gmx:100786966 662.914