Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03323 ATGGAAGAAAGATATGAGCCATTAAAAGAACTTGGTTCTGGAAATTTTGGTGTTGCTAGATTGGCTAAAGACAAAAAAACTGGTGAGCTTGTTGCTCTCAAATACATAGAGAGGGGCAAAAAGATTGATGAGAATGTCCAAAGGGAGATAATTAATCACAGATCATTAAGGCATCCTAATATTGTCAGGTTCAAAGAGGTCTTGCTGACCCCTTCTCATTTAGCCATTGTCTTGGAATATGCTTCCGGTGGTGAACTCTTCGAGAGGATATGCACCGCTGGTCGATTTAGCGAAGACGAGGGAAGATATTTCTTCCAACAGCTACTATCTGGCGTTAGCTACTGTCATTCAATGGAAATTTGTCACAGAGATCTGAAATTGGAAAACACTCTCTTGGACGGAAATCCATCTCCTCGGCTTAAAATTTGCGACTTCGGTTACTCCAAGTCTGGAATACTACACTCTCAACCGAAGTCAACAGTTGGAACTCCTGCTTACATCGCTCCCGAGGTTCTGTCACGAAAGGAGTATGACGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTAACTCTATATGTAATGCTAGTTGGTGCATATCCATTTGAAGATCCAGAAGATCCTAGAAATTTCAGAAAGACTATTGGGAGAATAATAGGTGTTCAATACTCCATACCCGACTATGTACGCATTTCTGCAGATTGTAGGAATCTTCTATCTCGCATCTTTGTTGCTGATCCTGCCAAGAGGATCACAATCCCAGAGATAAAACAGAACCCTTGGTTTTTGAAGAATATGCCTAAAGAGATAATTGAAGCTGAAAGAAAAGGTTATGTGGAAACAAAGAAAGACCAACCAAGCCAAAGTGTAGAAGAAATCATGAGAATCATACAAGAGGCGAGGGTACCTGGACAAGGTTCTAAGGCTGGCGATGACGGTCAAGGTGACACCGGTTCAATGAACATCGAAGACGATGAGGAAATTGATGTCAGTGGTGACTATGAAAATGTGTGA 1011 0.4164 MEERYEPLKELGSGNFGVARLAKDKKTGELVALKYIERGKKIDENVQREIINHRSLRHPNIVRFKEVLLTPSHLAIVLEYASGGELFERICTAGRFSEDEGRYFFQQLLSGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSGILHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRISADCRNLLSRIFVADPAKRITIPEIKQNPWFLKNMPKEIIEAERKGYVETKKDQPSQSVEEIMRIIQEARVPGQGSKAGDDGQGDTGSMNIEDDEEIDVSGDYENV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03323 336 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Trre16g03323 336 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03323 336 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Trre16g03323 336 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03323 336 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Trre16g03323 336 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03323 336 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Trre16g03323 336 MobiDBLite consensus disorder prediction 296 336 - -
Trre16g03323 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Trre16g03323 336 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Trre16g03323 336 SUPERFAMILY Protein kinase-like (PK-like) 3 271 IPR011009 -
Trre16g03323 336 CDD STKc_SnRK2 4 260 - -
Trre16g03323 336 MobiDBLite consensus disorder prediction 317 336 - -
Trre16g03323 336 PANTHER SERINE/THREONINE KINASE 3 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03323 Trre-Chr16 30254105 30256428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03323 4 274 CBL-interacting serine-threonine protein kinases AT4G24400 43.011 6.18e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre16g03323 Pkinase 1.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03323 K14498 - gmx:100817713 640.573