Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03314 ATGTGGAGTGTCTATAAAGGGGACACTGAAGATCAATTGGCACTGTTGGTTCGAGATATTAAGGGAGATACTATACAAGTTACTGTGATGAACAATGATATTGGGGCATGGAAACCCATACTGGCTGTAGGGAAGACTTATCAAATGAACAACTTCAGAGTTTTCGACAATGATGGCGATTACAAAATGACAACACACAAATATCGGCTAACATTGGTTGGTGCTACAAAAATTGAAGAAGCTTTAATCCCTGATATACTGCCAACCAACTTTAACTTCAAGGATTTTTCTGAAATTCATGCTGGGAAATACACTCCAGACTTATTAGTTGATGCTATTGGTGTCATACATGAATTCCGCAAATGTGTTACTGCATCCACTACAAGGAAAGCTCAAGTTTCATTCACTCTTAAGGATTTAAGGGATACTATTATCGACTGCACTCTTTGGGACTCCCTTTCTGTGGAATTTATGACATCTTACAACCAGCGATCTGATTCAGGCCCCATAGTAATCATCATTAAGCATGCTAGGGTGAAGGAACCTCAAGGTGTGTACCCAATTCAGTTGACTAATGTCTGGAATGACACCAAATTGGTTTTCGATACATCAGTTCCTGAGATTAAAGCATTTATGAACAGTTTGCCAGACAACGTGACCTACTTACCACATACCCCAATGGCTTCTAAATCCACCCATTTTTACACACAAACCTCTGGTGGGTCGCAAAATACTTCTGACGACAATTGGATGAAGGGTGCGCGTATTTTGTCATTGGGCGACATGAAGAAACTTAAAGTGGACACTTACTGTGTTACAACTGTTACAACAAAAAAAGTCAGGGTGTCAAACCATGGATGGTTTTTCAGAGCGTGCCGTGAATGCAATTTAAAGGTAGAGGGCAAAGTACCTCCTTATATTTGTAAGAAGGGCCACCAAGAAAATGATCCACTGATAAAGTATAAAGTTGATGTTGAGGTTTTTGATGGCGATGAGGCGGCAAAGTTTGTGTTCTGGGACAGTTCGCTTGAAGAATTGCTTGGAATGACTGCATCTACGCTACATGAAAAGCAGTGTCAGATTGGCTGTTCTGACGCTGTAGATTACCCTGATGATCTAGATGACATAATGGGCAGGAAATTTGCCTTTAGAGTCAAGTGGCAACCAGGATGGGGAGGACAGGGGTCTGTTGTCCACTGTAAGGATAGTCAAGAGTTAGTTGCAAAGATACAAGAACATCTTCCTGTTGCAGAGAGTGCTGTCAAAGATATTGAAACTATTGCTGAACTCCCTGATGATGTTATCTCCATTTCTGATTCACCACAAATCCAGAATTTTACTTCATCTGATATCGAGAAGTTTGCTAAGTTGGATGATGCAATTTTAAGCACACCAAATGTCACCAGTACTGGAGATACTGACATGTCCGACTCTTCTCACAAAACTCCATCCAAGAGAGTTGCTTCGAAGACTATATCAATTGACCAAACAAATCTTGATGCGCAGTTCTCATCCACAAGAGTGACTAAACTCATTAAAAAGGAGATGCCATGA 1554 0.4067 MWSVYKGDTEDQLALLVRDIKGDTIQVTVMNNDIGAWKPILAVGKTYQMNNFRVFDNDGDYKMTTHKYRLTLVGATKIEEALIPDILPTNFNFKDFSEIHAGKYTPDLLVDAIGVIHEFRKCVTASTTRKAQVSFTLKDLRDTIIDCTLWDSLSVEFMTSYNQRSDSGPIVIIIKHARVKEPQGVYPIQLTNVWNDTKLVFDTSVPEIKAFMNSLPDNVTYLPHTPMASKSTHFYTQTSGGSQNTSDDNWMKGARILSLGDMKKLKVDTYCVTTVTTKKVRVSNHGWFFRACRECNLKVEGKVPPYICKKGHQENDPLIKYKVDVEVFDGDEAAKFVFWDSSLEELLGMTASTLHEKQCQIGCSDAVDYPDDLDDIMGRKFAFRVKWQPGWGGQGSVVHCKDSQELVAKIQEHLPVAESAVKDIETIAELPDDVISISDSPQIQNFTSSDIEKFAKLDDAILSTPNVTSTGDTDMSDSSHKTPSKRVASKTISIDQTNLDAQFSSTRVTKLIKKEMP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03314 517 MobiDBLite consensus disorder prediction 465 490 - -
Trre16g03314 517 Gene3D - 85 221 IPR012340 -
Trre16g03314 517 SUPERFAMILY Nucleic acid-binding proteins 268 389 IPR012340 -
Trre16g03314 517 CDD RPA1_DBD_B_like 111 216 - -
Trre16g03314 517 Gene3D - 2 82 IPR012340 -
Trre16g03314 517 Gene3D - 234 413 IPR012340 -
Trre16g03314 517 SUPERFAMILY Nucleic acid-binding proteins 13 81 IPR012340 -
Trre16g03314 517 Pfam Replication factor-A C terminal domain 280 387 IPR013955 -
Trre16g03314 517 SUPERFAMILY Nucleic acid-binding proteins 90 221 IPR012340 -
Trre16g03314 517 Pfam Domain of unknown function DUF223 15 105 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03314 Trre-Chr16 30185664 30188310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03314 19 362 Core DNA Replication Machinery Family AT5G08020 23.224 3.71e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03314 - - tpra:123884216 635.565