Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03307 ATGGAAATGTACCAACTTGGTCTTGTTTGTGTCATATTGCTCTTACCTTACCTATGTAACTCACAAGACTCTTTTACTGACTCCAGAGCAACATATTACGGGGGAGCTTGTGGCTTTGGAGAGTATGGAAGGACGGTGAATGATGGCAGTGTAGCAGGTGTGTCTAAGCTATGGAAGAATGGTAGTGGCTGTGGTTCATGCTATCAGGTGAGGTGCAAAATACCACAATACTGTGATGAAAACGGAGCAACTTTGGTGGTAACAGACTATGGTGAAGGAGATAGAACAGATTTCATAATGAGTCCACGTGGCTACTCAAGATTGGGGCGCAATGCAGATGCATCTGCAGAGCTATTCAAATATGGTGTAGTAGATATTGAATACAAAAGAGTTCTGATCTAA 402 0.4254 MEMYQLGLVCVILLLPYLCNSQDSFTDSRATYYGGACGFGEYGRTVNDGSVAGVSKLWKNGSGCGSCYQVRCKIPQYCDENGATLVVTDYGEGDRTDFIMSPRGYSRLGRNADASAELFKYGVVDIEYKRVLI 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03307 133 Gene3D - 21 131 IPR036908 -
Trre16g03307 133 PANTHER EXPANSIN-B3 25 131 - -
Trre16g03307 133 Pfam Lytic transglycolase 51 128 IPR009009 -
Trre16g03307 133 SUPERFAMILY Barwin-like endoglucanases 10 131 IPR036908 -
Trre16g03307 133 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 133 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03307 Trre-Chr16 29975324 29976253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03307 6 131 Expansin Gene Family AT4G17030 54.412 9.20e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03307 - - gmx:100779487 243.047