Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03304 ATGTATAGTGGCTATAACATAGTGGCTCAAGTCCATGAACGCAGCAAAAACCCTGATTACTTTGCTGTTGTGGTTCTCTATGTAGATGGAATGTATGATGTCAATGTTGTTGAGATGTGGCAGGAAGATTGCCAAGAATGGAGACCTTTGAGGAGAGTATATGGAGTAGTGTTTGACTCAGCCAACCCACCAAGTGGTGAAATATATTTGAGGTTCCAAGTGAGTGGAATTAATGCAGGTGTTTATTGGGTGCAGTCCAAAAATGCTATCCCTAGTGATTGGAAAGCTGGAGCTGCATATGACACTATGGATGGTTCAACTTAA 324 0.4167 MYSGYNIVAQVHERSKNPDYFAVVVLYVDGMYDVNVVEMWQEDCQEWRPLRRVYGVVFDSANPPSGEIYLRFQVSGINAGVYWVQSKNAIPSDWKAGAAYDTMDGST 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03304 107 PANTHER EXPANSIN-B3 2 102 - -
Trre16g03304 107 Pfam Expansin C-terminal domain 9 91 IPR007117 -
Trre16g03304 107 SUPERFAMILY PHL pollen allergen 10 101 IPR036749 -
Trre16g03304 107 Gene3D - 1 103 IPR036749 -
Trre16g03304 107 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 19 102 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03304 Trre-Chr16 29963257 29964239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03304 2 102 Expansin Gene Family AT4G17030 58.416 1.95e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03304 - - psat:127135298 199.134