Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03303 ATGGGCTGTGTAGAACGGCCCAATAGGAGAGACTGCCAGGATTTCTCCTTTGTTGGAGCAAGGAACCGGCATTTAGCCCTTATCCTGGTGATGAGCTGTCCCCATCGTGCGGAGAGGCGGTTGCTTCATGTATATCGTGTTCTAGTAAATAGGAACACGTGGAAGCCGTGTCAGAGTATCGAATCCGAGCAGAGAAGCTCGCTTGCAGCCGAGCAGGGACTCGCGATCCATAATGGCGAGCAGGAGCTACAATCTCCTTCTGTCGAGCAGGATGTGGATTGGGCCAGCTCTGGGCCCAGTCCAGAACAAGTTCCATGTATGTATAGTGGCTATAACATAGTGGCTCAAGTCCATGAACGCAGCAAAAACCCTGATTACTTTGCTGTTGTGGTTCTCTATGTAGATGGAATGTATGATGTCAATGTTGTTGAGATGTGGCAGGAAGATTGCCAAGAATGGAGACCTTTGAGGAGAGTATATGGAGTAGTGTTTGACTCAGCCAACCCACCAAGTGGTGAAATATATTTGAGGTTCCAAGTGAGTGGAATTAATGCAGGTGTTTATTGGGTGCAGTCCAAAAATGCTATCCCTAGTGATTGGAAAGCTGGAGCTGCATATGACACTATGGATGGTTCAACTTAA 642 0.4766 MGCVERPNRRDCQDFSFVGARNRHLALILVMSCPHRAERRLLHVYRVLVNRNTWKPCQSIESEQRSSLAAEQGLAIHNGEQELQSPSVEQDVDWASSGPSPEQVPCMYSGYNIVAQVHERSKNPDYFAVVVLYVDGMYDVNVVEMWQEDCQEWRPLRRVYGVVFDSANPPSGEIYLRFQVSGINAGVYWVQSKNAIPSDWKAGAAYDTMDGST 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03303 213 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 125 208 IPR007117 -
Trre16g03303 213 MobiDBLite consensus disorder prediction 80 97 - -
Trre16g03303 213 SUPERFAMILY PHL pollen allergen 116 207 IPR036749 -
Trre16g03303 213 PANTHER EXPANSIN-B3 103 208 - -
Trre16g03303 213 Pfam Expansin C-terminal domain 116 197 IPR007117 -
Trre16g03303 213 MobiDBLite consensus disorder prediction 80 100 - -
Trre16g03303 213 Gene3D - 105 209 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03303 Trre-Chr16 29963257 29964557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03303 102 208 Expansin Gene Family AT4G17030 57.009 8.13e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03303 - - psat:127135298 207.608