Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03300 ATGGATATTAGTCATCAATTTAGCCTTGTTTGTTTTATACTGTTATTTCCAGCATTATGTAACTGCAAAGAATATTATGCCAAATCTAGAGCATCATATTATGACACATATGATGGCTATGGAAATTCAAGAGGAGCTTGTGGTTTTGGAGACTATGGAAAAATAGTGAATGATGGAAGTGTTGCAGCTGTGTCTGCAAAGCTCTGGAAGAATGGAGAAGGCTGTGGTGCATGCTATCAAGTGAGGTGCAAAATACCACAATTTTGTGATGACAATGGAGCAAATGTTGTGGTAACTGACTATGGTGAGGGAGATAGAACTGATTTCATAATGAGTCCACGCGCCTTCTCTAAATTAGGACGCAACGAAGTTGCATCTGAAAAGCTGAAGAAATATGGAGTATTAGATGTTGAATACAAAAGGGTTCCTTGTACATTTAAAGGCAACAATATAGTATACAAGATCAATGAAAATAGTAATAATCCTTACTACTTTGCTATCAATATTCTTTATGTTGGAGGAACTTATGATGTCACTACTGTTGAAATATGGCAGAGAGAACAACACCAATGGGTGGCCATGCGTAGGTCTTATGGGGCAGTATTTGACTTTGCTAACCCACCAAAAGGTGAAATCAGATTGAGATTCCAAGTGAGTAAAAATATTAAAGCCCATCATGTGGTATCAAGGTTTGCAATTCCTGCAACTTGGAAGGCTGGTGCTACATATTCCACCAAGATTTCGCACTCTTAA 753 0.3785 MDISHQFSLVCFILLFPALCNCKEYYAKSRASYYDTYDGYGNSRGACGFGDYGKIVNDGSVAAVSAKLWKNGEGCGACYQVRCKIPQFCDDNGANVVVTDYGEGDRTDFIMSPRAFSKLGRNEVASEKLKKYGVLDVEYKRVPCTFKGNNIVYKINENSNNPYYFAINILYVGGTYDVTTVEIWQREQHQWVAMRRSYGAVFDFANPPKGEIRLRFQVSKNIKAHHVVSRFAIPATWKAGATYSTKISHS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03300 250 Pfam Expansin C-terminal domain 152 234 IPR007117 -
Trre16g03300 250 Gene3D - 145 246 IPR036749 -
Trre16g03300 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Trre16g03300 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Trre16g03300 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Trre16g03300 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Trre16g03300 250 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Trre16g03300 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 149 IPR007112 -
Trre16g03300 250 Gene3D - 19 144 IPR036908 -
Trre16g03300 250 PANTHER EXPANSIN-B3 15 247 - -
Trre16g03300 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Trre16g03300 250 Pfam Lytic transglycolase 62 139 IPR009009 -
Trre16g03300 250 SUPERFAMILY Barwin-like endoglucanases 12 149 IPR036908 -
Trre16g03300 250 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
Trre16g03300 250 SMART dpbb_1 61 139 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03300 Trre-Chr16 29787736 29789041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03300 1 247 Expansin Gene Family AT4G17030 49.398 5.86e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03300 - - psat:127074244 444.506