Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03299 ATGAGTCCGCGCGCCTTCTCCAAATTGGGACGCAACGCAGTTGCATCTGAAAAGCTGAAGAAATATGGAGTATTGGAGGTTGAATATAAAAGGGTTCCTTGTACATATAAAGGCAACAATATAGTATACCAAATCAATGAAAATAGTAATAACCCTGGCTACTTTGCTATCAATGTTCTTTATGTTGGAGGAACTTATGATGTCACTGCTGTTGAGATTTGGCAGAGGGAACAACATCAATGGGTGGCCATGCGTAGGTCTTATGGGGCAGTATTTGATTTTGCTAACCCACCAAAAGGTGAAATCAAATTGAGATTCCAAGTGAGTAGCAATATTGAAGCCCATTATGTGGTGTCAAGGTTCCCAATTCCTGCACCATGGAAAGTTGGTGCTACTTATTCCACTAAGATTTCTCCTTATTAA 423 0.4019 MSPRAFSKLGRNAVASEKLKKYGVLEVEYKRVPCTYKGNNIVYQINENSNNPGYFAINVLYVGGTYDVTAVEIWQREQHQWVAMRRSYGAVFDFANPPKGEIKLRFQVSSNIEAHYVVSRFPIPAPWKVGATYSTKISPY 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03299 140 PRINTS Expansin/Lol pI family signature 81 95 IPR007118 GO:0005576
Trre16g03299 140 PRINTS Expansin/Lol pI family signature 121 135 IPR007118 GO:0005576
Trre16g03299 140 PRINTS Expansin/Lol pI family signature 22 38 IPR007118 GO:0005576
Trre16g03299 140 PANTHER EXPANSIN-B3 1 137 - -
Trre16g03299 140 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 53 135 IPR007117 -
Trre16g03299 140 SUPERFAMILY PHL pollen allergen 40 134 IPR036749 -
Trre16g03299 140 Gene3D - 33 136 IPR036749 -
Trre16g03299 140 Pfam Expansin C-terminal domain 43 119 IPR007117 -
Trre16g03299 140 SUPERFAMILY Barwin-like endoglucanases 1 39 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03299 Trre-Chr16 29764983 29765525 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03299 1 137 Expansin Gene Family AT4G17030 46.715 2.00e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03299 - - psat:127074244 251.521