Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03296 ATGGATCTTAGCTTTAAGCATCAATTTAGCCTTGTTTGTGTTATACTCTTATTTCCAGCATTATGTAACTGCAAGGAATATTATGCCAAATCCAGAGCATCCTATTATGGCACATCTGATGGCTATGGAAATTCAAGGGGAGCTTGTGGTTTTGGATATTATGGAAAAATAGTGAATGATGGTAGTGTTGCAGCTGTGTCTGCAAAACTCTGGAAGAATGGAGAAGGTTGTGGTGCATGCTATCAAGTGAGGTGCAAAATACCACAATTCTGTGATGACAATGGAACATATGTGGTGGTAACCGACTATGGCGAGGGAGATAGAACTGATTTCATAATGAGTCCACGCGCCTTCTCCAAATTGGGACGCAACGCAGTTGCATCTGAAAAGCTGAAGAAATATGGAGTATTGGAGGTTGAATATAAAAGGGTTCCTTGTACATATAAAGGCAACAATATAGTATACCAAATCAATGAAAATAGTAATAACCCTGGCTACTTTGCTATCAATGTTCTTTATGTTGGAGGAACTTATGATGTCACTGCTGTTGAGATTTGGCAGAGGGAACAACATCAATGGGTGGCCATGCGTAGGTCTTATGGGGCAGTATTTGATTTTGCTAACCCACCAAAAGGTGAAATCAAATTGAGATTCCAAGTGAGTAGCAATATTGAAGCCCGTTATGTGGTGTCAAAGTTCCCAATTCCTGCACCATGGAAAGCTGGTGCTACTTATTCCACTAAGATATCGCCTTATTAA 759 0.4005 MDLSFKHQFSLVCVILLFPALCNCKEYYAKSRASYYGTSDGYGNSRGACGFGYYGKIVNDGSVAAVSAKLWKNGEGCGACYQVRCKIPQFCDDNGTYVVVTDYGEGDRTDFIMSPRAFSKLGRNAVASEKLKKYGVLEVEYKRVPCTYKGNNIVYQINENSNNPGYFAINVLYVGGTYDVTAVEIWQREQHQWVAMRRSYGAVFDFANPPKGEIKLRFQVSSNIEARYVVSKFPIPAPWKAGATYSTKISPY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03296 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Trre16g03296 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Trre16g03296 252 SMART dpbb_1 63 141 IPR007112 -
Trre16g03296 252 PANTHER EXPANSIN-B3 16 249 - -
Trre16g03296 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Trre16g03296 252 SUPERFAMILY Barwin-like endoglucanases 15 151 IPR036908 -
Trre16g03296 252 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Trre16g03296 252 Gene3D - 21 146 IPR036908 -
Trre16g03296 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Trre16g03296 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Trre16g03296 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Trre16g03296 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Trre16g03296 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Trre16g03296 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trre16g03296 252 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Trre16g03296 252 Gene3D - 147 248 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03296 Trre-Chr16 29718527 29719657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03296 5 249 Expansin Gene Family AT4G17030 50.602 1.71e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03296 - - psat:127074244 466.463