Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03293 ATGGGGAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACACTTGCAAATTACACTCCCTTACATGCTCGGACAGAACCTGTCGATTATGACGATCAAAGAGTTTCCAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTTAAATTGGTCAAACGAAAGAAGAACCATGATAATACTTATGCTGCATCTGGAGAGTTCACTCCTGAATATAATCAAGGATTCCAAAAAGCTGTCGATGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGTGTTCAATTTTGTGGCACCGATGCTAGTGATTTGACAGGTCCTTCGCAGTCAGTGGTCTGGGATACTGCGGTTCCATCGAAGAAGAGGACATGTGCAGGTCGTCTGAAGCATTCTTCTGTTGAGAAGCTCACAAAAGACTTGTGTACTATTCTTCATGAACAACAACAGTCTTGTTTCTCCGCTTCTTCTGAAGAGGAACTTCTTTTTGAAAGTGAAACGCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCATTTGATAATAAACAATGCCTAATGAATGAGGCATATTCATGCTATGGTTCGATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAACTCTGCTGGCCAAAGAATGCAACAGGAGCAACTTGAGAGGGAGAAGTCTCAGCTTGAAAAAATAGAAGTTCTTGGAAATCATGATTCACCACTGTGTATAATAGATTTAAATGATGTAGTCAACTATGAGGAGTTTTCAAGAAATTTGACAAATGAAGAACAGCAGCAATTACTGAAATATCTCCCTGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGATTTAACCTATTTTCAGAAACTTCTCGGAGAAGGTGTCCTCGATATTTCTCTGTTGGGGGCAAACCCTGAAGACTGCAAGACGTTGAAAAGGCTTGCATTGTCTAATCTGTCGAAGTCAAAATGGAAAGGTGGCATCAAAGCTGAAAAATATGATGATATGGAATCTCCTGCTGTAGCATCAAGTAATGTTGCAAATGCGAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATTGTAAAAGCTGGCTATGGCGGCAAAGAAGTTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTGCCTCGTAATGGTGGCTTGCACATGCTGGATTGTTCAAACTTTGTTGACGAGAGTTCTGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGAAGCGCCAGTAGTAGCTCGGTATATTCTCATGTTACTCGTCCTTGA 1605 0.4174 MGKQGPCYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTEPVDYDDQRVSRLKIVSLNKNKEVKLVKRKKNHDNTYAASGEFTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFCGTDASDLTGPSQSVVWDTAVPSKKRTCAGRLKHSSVEKLTKDLCTILHEQQQSCFSASSEEELLFESETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSFDNKQCLMNEAYSCYGSIPMLSDYTGMNFSSQGVAKVRNSAGQRMQQEQLEREKSQLEKIEVLGNHDSPLCIIDLNDVVNYEEFSRNLTNEEQQQLLKYLPVVDTAKLPDSLKIMFDSFQFKEDLTYFQKLLGEGVLDISLLGANPEDCKTLKRLALSNLSKSKWKGGIKAEKYDDMESPAVASSNVANAKRLRVSQNQNFPELKTTMRSPKRVIVKAGYGGKEVVDGSSISPKSLFALPRNGGLHMLDCSNFVDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSASSSSVYSHVTRP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03293 534 Gene3D - 287 395 IPR038108 -
Trre16g03293 534 Pfam Asx homology domain 286 370 IPR028020 -
Trre16g03293 534 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Trre16g03293 534 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Trre16g03293 534 PANTHER OSJNBB0038F03.10 PROTEIN 1 525 IPR044589 -
Trre16g03293 534 Gene3D - 3 88 IPR013088 GO:0006355|GO:0008270
Trre16g03293 534 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Trre16g03293 534 Coils Coil 275 295 - -
Trre16g03293 534 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Trre16g03293 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Trre16g03293 534 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 411 IPR044867 -
Trre16g03293 534 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03293 Trre-Chr16 29706273 29710920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03293 1 510 C2C2-Gata Transcription Factor Family AT4G17570 51.321 9.90e-148 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre16g03293 ASXH 7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03293 - - psat:127074243 754.977