Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03281 ATGTCAGACAATATTAGGAACCGCAACCAAAATGAAAGCGACTCAAATGCCAAAAGAAGAAAAGTAGTATTGGCTCTACGTGTAACCAATGCGCCAATAAATAATGGTTGCAAAAGAGGAAGGGGAAGAGGAAGAATGACTCATATGCCTCCCCAAAGAAGAGAGGTAGATTTACCAAAGTGGGGAAATCACGGCAGGCGACGCCCATATTCTCGCAGACCCAGAAGGAATATAGAAAATCTCCTACAAATAATTGTGGAAGACAGGAATCGTGATACTATTTGTTTGGTTTGTGGTGATGGAAGAGAAGAAGAATTTATCGGCTGTGTCAATTGCCCCTCCACTTATCATACTTCTTGTGTCAATAAGCAGTTTATACTGCAAGGGGATACATCCACAAAATTGTTATGTCCTTATTGCATATGCAAATATTGTGGAAAAATTAATCAATATTTAGTCGCATGCTGCCAGTGCCACAAGAAGTTTCATTGGGAGTGCTTACAAGCTAATGAAAAAGATTTCGTTATTAAAACGCTTAACTGTTCAAAGTCATATTGTGAACCAAATTGCAAACTGATACATGAAAAAATGGAGGTGTCACTTGGGGTCCAAAACTATATCAATGAGAAGTATTCTTGGAGAGTAGTCCGTAAAATGGAAAATGACCTCCCTGTTTCTAAGAATCGTCGCATGGAAATAAACTCAAAGATTGCACTTGCTGGGAAGTTGATGTGTGGAGCTTTTGAGAAAATTGTAGACACACACACCGGCATCGATGTTGTTCAAAATGTTGTTTATAGTTCCGGGTCCAATTTGACGAGGCTTAATTTTAACCGATTTTATACATTTGTTATTGAAGAAGACGACACAGTCATTGCTGCAGCTCTTATTAGATTTAATGGGACAGAGATTGCAGAAATGCCTTTCATTGCAACAAATGAGGCACATGGAGGAAAAGGAATTTGTCGTTTATTAATGGCGGAAATTGAATCATTCCTACGCGGCCTAGAAATTAAAAACTTGATTGTTCCATCGAGTCCGGGGTTTGTTGAAATGTGGAAAGATAAGTATGGTTTTGAGGTGGTTAACATCGGACAATTGAAGAAAATAATATCCTCATGTAACATGTTGATGTTTCCTCAAGCAACAAGACTATACAAAAATTTGTATAGAAGACCACTTGTTGATGTGGATTTGAATGTTTAA 1206 0.3798 MSDNIRNRNQNESDSNAKRRKVVLALRVTNAPINNGCKRGRGRGRMTHMPPQRREVDLPKWGNHGRRRPYSRRPRRNIENLLQIIVEDRNRDTICLVCGDGREEEFIGCVNCPSTYHTSCVNKQFILQGDTSTKLLCPYCICKYCGKINQYLVACCQCHKKFHWECLQANEKDFVIKTLNCSKSYCEPNCKLIHEKMEVSLGVQNYINEKYSWRVVRKMENDLPVSKNRRMEINSKIALAGKLMCGAFEKIVDTHTGIDVVQNVVYSSGSNLTRLNFNRFYTFVIEEDDTVIAAALIRFNGTEIAEMPFIATNEAHGGKGICRLLMAEIESFLRGLEIKNLIVPSSPGFVEMWKDKYGFEVVNIGQLKKIISSCNMLMFPQATRLYKNLYRRPLVDVDLNV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03281 401 ProSitePatterns Zinc finger PHD-type signature. 95 140 IPR019786 -
Trre16g03281 401 Gene3D - 264 368 - -
Trre16g03281 401 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g03281 401 CDD NAT_SF 283 343 - -
Trre16g03281 401 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 243 390 IPR000182 GO:0016747
Trre16g03281 401 SUPERFAMILY FYVE/PHD zinc finger 69 141 IPR011011 -
Trre16g03281 401 Pfam Acetyltransferase (GNAT) family 279 343 IPR000182 GO:0016747
Trre16g03281 401 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 275 365 IPR016181 -
Trre16g03281 401 SMART PHD_3 142 191 IPR001965 -
Trre16g03281 401 SMART PHD_3 94 141 IPR001965 -
Trre16g03281 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 156 IPR013083 -
Trre16g03281 401 PANTHER PHD FINGER PROTEIN 12 77 398 IPR042163 GO:0003714|GO:0045892
Trre16g03281 401 ProSiteProfiles Zinc finger RING-type profile. 95 140 IPR001841 -
Trre16g03281 401 ProSiteProfiles Zinc finger PHD-type profile. 92 143 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03281 Trre-Chr16 29558652 29560688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03281 95 389 PHD Transcription Factor Family AT1G05380 35.831 1.10e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03281 - - cam:101493361 345.51