Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03278 ATGTACGGAAACAATAATTTTGATTCCGATTTTGCCCTTTTAGACTCTATTCGCCGCCACTTGTTGGGTGAGTCCGAATCAATATTCGGTGCTCCAATAGCTTCTTCGGGTAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGTTTATACCCATGTTTGAGTGATAATTGGGGTGAATTACCTCTCAAGGAAGATGACTCGGAAGATATGGTGCTTTACGGCGTTCTCCGTGACGCCGTAAATGTTGGTTGGGTTCCTTCTCTTGAAATCGGGTCACCCGAAAGTATCTCATCGGGTTTTCCGTTAGAATTAACGGTTAAACCGGAACCGGATGTTATGCCAGTGGAAATTATTCCCAAGGTTGAGTCTACGGCGGAGCAAGTGGTTCCAGAAGTGCTAAAAGCTGCTCCGGTGAAAGGAAAACACTACCGCGGCGTTAGACAACGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGACCCGGCAAAAAACGGAGCTAGAGTTTGGCTCGGAACATTTGAAACTGCTGAAGATGCAGCGTTGGCTTATGATAGAGCTGCTTATAGGATGAGAGGTTCAAGAGCTTTGTTGAATTTTCCACTTCGGGTTAACTCCGGTGAACCCGACCCGGTTAGGATTACTTCAAAACGTGGTTCGCCGGAACGTTCTTCTTCATCTTCGTCGTCGGAAAGTAATTCTCCGGCAAAGAGGAAAAAGGTGATGACAAGTCAGAGTGGATTGAAAACAGGACAGGTGGGAAATCAAGTGGAACAATGTACACGTGGAGGACAGTTATTGGTTTCTTAA 813 0.4674 MYGNNNFDSDFALLDSIRRHLLGESESIFGAPIASSGNTRVFSRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEIGSPESISSGFPLELTVKPEPDVMPVEIIPKVESTAEQVVPEVLKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRITSKRGSPERSSSSSSSESNSPAKRKKVMTSQSGLKTGQVGNQVEQCTRGGQLLVS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03278 270 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Trre16g03278 270 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Trre16g03278 270 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Trre16g03278 270 PANTHER DNA-BINDING DOMAIN 131 242 IPR044808 GO:0003700|GO:0009873
Trre16g03278 270 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Trre16g03278 270 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Trre16g03278 270 MobiDBLite consensus disorder prediction 219 257 - -
Trre16g03278 270 FunFam Ethylene-responsive transcription factor 2 143 203 - -
Trre16g03278 270 Gene3D AP2/ERF domain 143 205 IPR036955 GO:0003700|GO:0006355
Trre16g03278 270 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
Trre16g03278 270 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
Trre16g03278 270 MobiDBLite consensus disorder prediction 208 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03278 Trre-Chr16 29528289 29529101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03278 9 269 AP2-EREBP Transcription Factor Family AT4G17500 54.064 2.59e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g03278 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03278 K09286 - gmx:100803653 337.421