Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g03278 | ATGTACGGAAACAATAATTTTGATTCCGATTTTGCCCTTTTAGACTCTATTCGCCGCCACTTGTTGGGTGAGTCCGAATCAATATTCGGTGCTCCAATAGCTTCTTCGGGTAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGTTTATACCCATGTTTGAGTGATAATTGGGGTGAATTACCTCTCAAGGAAGATGACTCGGAAGATATGGTGCTTTACGGCGTTCTCCGTGACGCCGTAAATGTTGGTTGGGTTCCTTCTCTTGAAATCGGGTCACCCGAAAGTATCTCATCGGGTTTTCCGTTAGAATTAACGGTTAAACCGGAACCGGATGTTATGCCAGTGGAAATTATTCCCAAGGTTGAGTCTACGGCGGAGCAAGTGGTTCCAGAAGTGCTAAAAGCTGCTCCGGTGAAAGGAAAACACTACCGCGGCGTTAGACAACGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGACCCGGCAAAAAACGGAGCTAGAGTTTGGCTCGGAACATTTGAAACTGCTGAAGATGCAGCGTTGGCTTATGATAGAGCTGCTTATAGGATGAGAGGTTCAAGAGCTTTGTTGAATTTTCCACTTCGGGTTAACTCCGGTGAACCCGACCCGGTTAGGATTACTTCAAAACGTGGTTCGCCGGAACGTTCTTCTTCATCTTCGTCGTCGGAAAGTAATTCTCCGGCAAAGAGGAAAAAGGTGATGACAAGTCAGAGTGGATTGAAAACAGGACAGGTGGGAAATCAAGTGGAACAATGTACACGTGGAGGACAGTTATTGGTTTCTTAA | 813 | 0.4674 | MYGNNNFDSDFALLDSIRRHLLGESESIFGAPIASSGNTRVFSRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEIGSPESISSGFPLELTVKPEPDVMPVEIIPKVESTAEQVVPEVLKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRITSKRGSPERSSSSSSSESNSPAKRKKVMTSQSGLKTGQVGNQVEQCTRGGQLLVS | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g03278 | 270 | ProSiteProfiles | AP2/ERF domain profile. | 144 | 202 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g03278 | 270 | PRINTS | Ethylene responsive element binding protein signature | 168 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g03278 | 270 | PRINTS | Ethylene responsive element binding protein signature | 145 | 156 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g03278 | 270 | PANTHER | DNA-BINDING DOMAIN | 131 | 242 | IPR044808 | GO:0003700|GO:0009873 | |
Trre16g03278 | 270 | Pfam | AP2 domain | 144 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g03278 | 270 | SMART | rav1_2 | 144 | 208 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g03278 | 270 | MobiDBLite | consensus disorder prediction | 219 | 257 | - | - | |
Trre16g03278 | 270 | FunFam | Ethylene-responsive transcription factor 2 | 143 | 203 | - | - | |
Trre16g03278 | 270 | Gene3D | AP2/ERF domain | 143 | 205 | IPR036955 | GO:0003700|GO:0006355 | |
Trre16g03278 | 270 | SUPERFAMILY | DNA-binding domain | 144 | 204 | IPR016177 | GO:0003677 | |
Trre16g03278 | 270 | CDD | AP2 | 143 | 202 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g03278 | 270 | MobiDBLite | consensus disorder prediction | 208 | 257 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g03278 | Trre-Chr16 | 29528289 | 29529101 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g03278 | 9 | 269 | AP2-EREBP Transcription Factor Family | AT4G17500 | 54.064 | 2.59e-87 | 259 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Trre16g03278 | AP2 | 1.1e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g03278 | K09286 | - | gmx:100803653 | 337.421 |