Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03277 ATGGCTAATTACGATGAAGTTTCAGCTCTTAAACGCATCAAATTACATCTTCTTGGTGAATTTTCTCCACTTCCATCTCCAATTTCACAACCTTCCTTAAATTTTGATTTCGATTTTGATTTTGATTTTCAATTTCAAACTGAACAAATTCAATCTCAATCCGAATCAAACTCAACCAATTCCGATTCATCAATTTCTATGGATCATTATTTGACACAGATTCCCGTCTTTGAATTTGATTCAAAACCTCAATTAATTGAAACTGAGAGTCCAAAACCTTTAATTTCCCATCCTGTTAACAATTCTCAACGAACTGTAGAGAAAAAGCCACAACTGAATCGAAAACCGTCGCTGAAAGTTGATTTACCGAAGAAAACAACCGAATGGATCCAGTTCGGAAAACCCGAACCGAAACCGGAGGTGGTTTTACAGAAGCAAGAAACGGTTGAGAAACAGCACTATAGAGGAGTTAGACAAAGACCGTGGGGAAAGTTCGCCGCCGAAATCCGTGACCCGAACAAACGCGGGTCAAGGGTTTGGCTTGGAACATTTGAAACGGCTATTGAAGCTGCTAAAGCTTATGATCGTGCTGCTTTTAGGCTGCGTGGATCTAAAGCGATTCTCAATTTTCCTCTTGAAGTCAACGCTGCGGTGATAGCGGCGGCGGCGGCGGCGGCGGAGAACTCCGGTGACGGTGAGAGAAAACGTTGCCGTGAAGAGGAAGATGAGGTAGTAGAAGTGAAACCGGTTGTGAAAAAAGAGAAAATAACGGAATTTGATGTGAACTATTTTAAAGAGATGCCGTTAACGCCGTCAGCTTTTACTGGGTTTTGGGATAGTGATGTTAAGGGGTTCAACGTTCCACCGTTGTCGCCGTTATCATCCTTTTGCTTGTCACCTCTAGTGGCTGTGTGA 915 0.4251 MANYDEVSALKRIKLHLLGEFSPLPSPISQPSLNFDFDFDFDFQFQTEQIQSQSESNSTNSDSSISMDHYLTQIPVFEFDSKPQLIETESPKPLISHPVNNSQRTVEKKPQLNRKPSLKVDLPKKTTEWIQFGKPEPKPEVVLQKQETVEKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVNAAVIAAAAAAAENSGDGERKRCREEEDEVVEVKPVVKKEKITEFDVNYFKEMPLTPSAFTGFWDSDVKGFNVPPLSPLSSFCLSPLVAV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03277 304 CDD AP2 152 211 IPR001471 GO:0003700|GO:0006355
Trre16g03277 304 Gene3D AP2/ERF domain 152 214 IPR036955 GO:0003700|GO:0006355
Trre16g03277 304 Pfam AP2 domain 153 203 IPR001471 GO:0003700|GO:0006355
Trre16g03277 304 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Trre16g03277 304 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
Trre16g03277 304 MobiDBLite consensus disorder prediction 90 112 - -
Trre16g03277 304 FunFam Ethylene-responsive transcription factor 2 152 213 - -
Trre16g03277 304 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Trre16g03277 304 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Trre16g03277 304 SUPERFAMILY DNA-binding domain 153 213 IPR016177 GO:0003677
Trre16g03277 304 PANTHER DNA-BINDING DOMAIN 66 231 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03277 Trre-Chr16 29493015 29493929 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03277 1 294 AP2-EREBP Transcription Factor Family AT5G47230 44.127 1.23e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g03277 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03277 K09286 - gmx:100816039 301.212