Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03275 ATGGCTAACTATGATGAAGTTTCAGCTCTTAAAAGAATTAAATTACATCTTTTAGGTGAATTTTCTCCACTACCATCTCCTATTTCACAACCTTGCTTTGACTTTGATTTTGATTTTGATTTTGATTTTCAATTTCAAACTAACCCAACCACTTCTCAATCCGAATCCAACAACTCTTCCACTTTGGATCTCTTCCAATTTGATTACAAACCTCAACCGATTGAACCTCAGAGCCCCAAGCCCTTGATATCTAATCCTCAACGAAAGAAGCAGAAATTGAATCGAAAACCGTCGCTAGAAATCGCTCTCCCGAATAAAACATCCGAATGGATCCAATTCGGAAACCCGAATCCGAAACCGGAGGTGGTTGTACAAAAACCGGAAGCTGCTGAGAAACAGCACTACAGAGGAGTTAGAAGAAGACCGTGGGGAAAGTTTGCCGCTGAGATCCGTGACCCGAACAAACGCGGGTCAAGAGTTTGGCTTGGAACTTTCGAAACGGCTATTGAAGCTGCTAAAGCATACGACAGTACCGCTTTTAGGATGCGTGGATCTAAAGCGATTCTCAATTTTCCACTTGAAGTCAACGAGGCGGAAACGGCGGCGGTAGAGACCTCCGGCAACGGTGATCGAAAACGGTGCCGTGAAGAGGAAGAGGTAGTAGAAGTGAAACCGGTGGTGAAAAAGGAGAAAATAACGGAATTTGATGTGAACTGTTTTAAAGAGATGCCGTTAACGCCGTCAGCTTTTACTGGGTTTTGGGATAGTGATGATGTTAAGGGGTTGTTCAACTTTTCACAGTTGTCGCCGTTATCTTCCTTTTGTTTGTCACCTCTAGTTGCCGTGTGA 849 0.4358 MANYDEVSALKRIKLHLLGEFSPLPSPISQPCFDFDFDFDFDFQFQTNPTTSQSESNNSSTLDLFQFDYKPQPIEPQSPKPLISNPQRKKQKLNRKPSLEIALPNKTSEWIQFGNPNPKPEVVVQKPEAAEKQHYRGVRRRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDSTAFRMRGSKAILNFPLEVNEAETAAVETSGNGDRKRCREEEEVVEVKPVVKKEKITEFDVNCFKEMPLTPSAFTGFWDSDDVKGLFNFSQLSPLSSFCLSPLVAV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03275 282 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Trre16g03275 282 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Trre16g03275 282 SUPERFAMILY DNA-binding domain 134 194 IPR016177 GO:0003677
Trre16g03275 282 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Trre16g03275 282 MobiDBLite consensus disorder prediction 75 95 - -
Trre16g03275 282 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Trre16g03275 282 Gene3D AP2/ERF domain 133 194 IPR036955 GO:0003700|GO:0006355
Trre16g03275 282 PANTHER DNA-BINDING DOMAIN 92 206 IPR044808 GO:0003700|GO:0009873
Trre16g03275 282 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Trre16g03275 282 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
Trre16g03275 282 FunFam Ethylene-responsive transcription factor 2 133 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03275 Trre-Chr16 29430341 29431189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03275 1 282 AP2-EREBP Transcription Factor Family AT4G17490 47.751 1.20e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre16g03275 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03275 K09286 - gmx:100816039 293.893