Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03270 ATGCATATAGAGGAATTGAAGGGAGGTGAGGTTGTTGGTGAAGGTGGAGAAGAAGGTAGATGGAGTTTTGTTGGTTCTGATACGAAAAGGGTTTTGGTTGGAGCAGGCGCTCGAGCGTTATTTTATCCTACGCTTGTTTATAATGTTGTTAGGAATAGGCTTGAGGCTGAATTTCGATGGTGGGATAAAATTGATGAGTTCGTATTGTTAGGCGCCGTTCCATTTCCTATTGATGTTCCTCGCTTGAAGGATCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATATGAGACTTTAGTTCCAACCACATTATATCATGCCCATGGAATCGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCACCACTAAATGACATCCGCCGTGCTGTTGATTTCATACATAAAAATGCATTGTCTGGACGCACTACATATGTCCACTGCAAAGCCGGACGGGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAACTGATGTCACCTGATGCTGCATATGAATATGTGAAGTCAATTCGGCCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGCTGTCCAGGAATACTACCGCCACCTTATTGTGAGGAGGGCTGTTGGTTTTGCACCTGCAGCTGATCTATTTGTAAAAGCTTCTGGGTTTTCAGCAGTTTCACGAGATCTTATAAAGTTTGATGACAATTCTGTAGTTGTGGTAACAGAGCAAGATCTTGAGGGATACAGCCCAAGTTGTCAATCAGAAACCATGACAAGTGAAATATGGGCAGATTTAAACGTTGTTTACCGTGTGCGAGTTGCTGGACAGGCAGCATTGGCTAGAATATCTTGCCTTTGGTTGCGATATGGTGCCGACCAGAAGATATCTGCTGAAAAACTGAGCAGGGAAAGCAGTTGCTCAATCAGAACTAATCACTTGGGAGGAATTAGTGTTGATATCCATGTGTACTGA 984 0.437 MHIEELKGGEVVGEGGEEGRWSFVGSDTKRVLVGAGARALFYPTLVYNVVRNRLEAEFRWWDKIDEFVLLGAVPFPIDVPRLKDLGVRGVITLNESYETLVPTTLYHAHGIDHLVIPTRDYCFAPPLNDIRRAVDFIHKNALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMSPDAAYEYVKSIRPRVLLASSQWQAVQEYYRHLIVRRAVGFAPAADLFVKASGFSAVSRDLIKFDDNSVVVVTEQDLEGYSPSCQSETMTSEIWADLNVVYRVRVAGQAALARISCLWLRYGADQKISAEKLSRESSCSIRTNHLGGISVDIHVY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03270 327 Pfam Dual specificity phosphatase, catalytic domain 84 203 IPR000340 GO:0008138|GO:0016311
Trre16g03270 327 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 205 IPR029021 -
Trre16g03270 327 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Trre16g03270 327 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Trre16g03270 327 CDD PTPMT1 60 204 IPR044596 GO:0004721
Trre16g03270 327 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Trre16g03270 327 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 296 - -
Trre16g03270 327 Gene3D Protein tyrosine phosphatase superfamily 60 210 IPR029021 -
Trre16g03270 327 FunFam Dual specificity phosphatase domain protein 60 207 - -
Trre16g03270 327 SMART ptp_7 102 213 IPR003595 -
Trre16g03270 327 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03270 Trre-Chr16 29345951 29349156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03270 28 327 Protein tyrosine phosphatase (PTP) family AT2G35680 61.364 2.70e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03270 - - gmx:100790413 543.502