Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03265 ATGGTTGAAAAAGAAGACTTGGGTTTGAGTCTAAGCTTGAACTTCTTTCAAAATACCCCAAAGCAATCTCAACCTCTCAATCTAATGTCCTCTTCTCCTTCTCCTTATTTCCATTCTCAACAAATTATCACTCCATCAGATCGAAACTTGAAACTTGGGATTGATGTGAATCGATTGCCATGTACCGTGGTTGACTGCGAAGAAGAAGAAGAAGAAGCAGGGGTTTCATCTCCAAACAGTACGGTTTCGAGTGTAAGTGGAAAACGAAGCTCAAGAGAATTAGATAATGACGTGGACAATAGAGGGAATATCAGTGATGAAGAAGACGCTGAAACCGCTAGAAAAAAACTCAGACTCTCTAAAGATCAATCACTTATTCTAGAAGAAACATTCAAAGAACACAATACCCTTAATCCCAAACAAAAATTAGCACTTGCAAAACAACTTGGCCTTACTCCAAGACAAGTTGAAGTCTGGTTCCAAAACAGACGAGCCAGGACAAAGCTAAAGCAAACGGAGGTTGATTGTGAGGTGTTGAAAAGGTGTTGTGAAAATCTAACGGAGGAAAATGGGAGACTACAGAAGGAAGTTCAAGAGCTAAGAGCACTGAAACTTTCTCCTCAATTTTACATGCAAATGACACCACCCACTACTCTTACTATGTGCCCATCTTGTGAACGTGTGGCTGTTCCATCTTCCGGTGTGGATGCATCCAACCGTAACATTTCTATGGCCCAAGCCCATCCTCGGGTTGTACCCATAGGCCCGTGGGCTTCTGTAGCTCCCATCACGCAGCATAGGATGTTTGATGTTTTCCGTCAATGA 825 0.423 MVEKEDLGLSLSLNFFQNTPKQSQPLNLMSSSPSPYFHSQQIITPSDRNLKLGIDVNRLPCTVVDCEEEEEEAGVSSPNSTVSSVSGKRSSRELDNDVDNRGNISDEEDAETARKKLRLSKDQSLILEETFKEHNTLNPKQKLALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENGRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSGVDASNRNISMAQAHPRVVPIGPWASVAPITQHRMFDVFRQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03265 274 SUPERFAMILY Homeodomain-like 106 171 IPR009057 -
Trre16g03265 274 Gene3D - 118 168 - -
Trre16g03265 274 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 242 - -
Trre16g03265 274 Coils Coil 169 203 - -
Trre16g03265 274 CDD homeodomain 114 171 IPR001356 GO:0003677
Trre16g03265 274 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Trre16g03265 274 SMART HOX_1 112 174 IPR001356 GO:0003677
Trre16g03265 274 MobiDBLite consensus disorder prediction 90 111 - -
Trre16g03265 274 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Trre16g03265 274 MobiDBLite consensus disorder prediction 69 111 - -
Trre16g03265 274 FunFam Homeobox-leucine zipper protein HAT22 118 164 - -
Trre16g03265 274 MobiDBLite consensus disorder prediction 75 89 - -
Trre16g03265 274 SMART halz 170 213 IPR003106 GO:0006355|GO:0043565
Trre16g03265 274 PRINTS Lambda-repressor HTH signature 141 150 IPR000047 GO:0003677
Trre16g03265 274 PRINTS Lambda-repressor HTH signature 150 166 IPR000047 GO:0003677
Trre16g03265 274 Pfam HD-ZIP protein N terminus 1 93 IPR006712 GO:0005634
Trre16g03265 274 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355|GO:0043565
Trre16g03265 274 Pfam Homeodomain 114 168 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03265 Trre-Chr16 29303110 29304684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03265 1 273 Homeobox Transcription Factor Family AT4G17460 58.863 3.40e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g03265 HD-ZIP_N 5.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03265 K09338 - gmx:100813367 338.961