Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03264 ATGATGATGGTTGAAAAAGAAGACTTGGGTTTGAGTCTAAGCTTGAACTTCTTTCAAAATACCCCAAAGCAATCTCAACCTCTCAATCTAATGTCCTCTTCTCCTTCTCCTTATTTCCATTCTCAACAAATTATCACTCCATCAGATCGAAACTTGAAACTTGGGATTGATGTGAATCGATTGCCATGTACCGTGGTTGACTGCGAAGAAGAAGAAGAAGAAGCAGGGGTTTCATCTCCAAACAGTACGGTTTCGAGTGTAAGTGGAAAACGAAGCTCAAGAGAATTAGATAATGACGTGGACAATAGAGGGAATATCAGTGATGAAGAAGACGCTGAAACCGCTAGAAAAAAACTCAGACTCTCTAAAGATCAATCACTTATTCTAGAAGAAACATTCAAAGAACACAATACCCTTAATCCCAAACAAAAATTAGCACTTGCAAAACAACTTGGCCTTACTCCAAGACAAGTTGAAGTCTGGTTCCAAAACAGACGAGCCAGGACAAAGCTAAAGCAAACGGAGGTTGATTGTGAGGTGTTGAAAAGGTGTTGTGAAAATCTAACGGAGGAAAATGGGAGACTACAGAAGGAAGTTCAAGAGCTAAGAGCACTGAAACTTTCTCCTCAATTTTACATGCAAATGACACCACCCACTACTCTTACTATGTGCCCATCTTGTGAACGTGTGGCTGTTCCATCTTCCGGTGTGGATGCATCCAACCGTAACATTTCTATGGCCCAAGCCCATCCTCGGGTTGTACCCATAGGCCCGTGGGCTTCTGTAGCTCCCATCACGCAGCATAGGATGTTTGATGTTTTCCGTCAATGA 831 0.4224 MMMVEKEDLGLSLSLNFFQNTPKQSQPLNLMSSSPSPYFHSQQIITPSDRNLKLGIDVNRLPCTVVDCEEEEEEAGVSSPNSTVSSVSGKRSSRELDNDVDNRGNISDEEDAETARKKLRLSKDQSLILEETFKEHNTLNPKQKLALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENGRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSGVDASNRNISMAQAHPRVVPIGPWASVAPITQHRMFDVFRQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03264 276 MobiDBLite consensus disorder prediction 71 113 - -
Trre16g03264 276 SUPERFAMILY Homeodomain-like 108 173 IPR009057 -
Trre16g03264 276 MobiDBLite consensus disorder prediction 77 91 - -
Trre16g03264 276 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981|GO:0006355
Trre16g03264 276 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677
Trre16g03264 276 SMART HOX_1 114 176 IPR001356 GO:0003677
Trre16g03264 276 Pfam Homeodomain 116 170 IPR001356 GO:0003677
Trre16g03264 276 SMART halz 172 215 IPR003106 GO:0006355|GO:0043565
Trre16g03264 276 PRINTS Lambda-repressor HTH signature 143 152 IPR000047 GO:0003677
Trre16g03264 276 PRINTS Lambda-repressor HTH signature 152 168 IPR000047 GO:0003677
Trre16g03264 276 Gene3D - 120 170 - -
Trre16g03264 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 244 - -
Trre16g03264 276 Coils Coil 171 205 - -
Trre16g03264 276 CDD homeodomain 116 173 IPR001356 GO:0003677
Trre16g03264 276 MobiDBLite consensus disorder prediction 92 113 - -
Trre16g03264 276 Pfam HD-ZIP protein N terminus 3 95 IPR006712 GO:0005634
Trre16g03264 276 Pfam Homeobox associated leucine zipper 172 206 IPR003106 GO:0006355|GO:0043565
Trre16g03264 276 FunFam Homeobox-leucine zipper protein HAT22 120 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03264 Trre-Chr16 29303104 29304684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03264 2 275 Homeobox Transcription Factor Family AT4G17460 59.000 6.19e-97 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g03264 HD-ZIP_N 5.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03264 K09338 - gmx:100813367 340.887