Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03253 ATGACGCGGCGTTGTTCCCATTGCAGCCACAATGGGCACAACTCAAGAACATGTCCTAACCGTGGTGTTAAGCTATTCGGAGTTCGATTAACCGATGGGATCCGGAAAAGTGCTAGTATGGGTAATCTTAGTCATTATACTGGTTCCGGGTCTGGATCCCTTCATACCGGGTTAAATAACCCGGGTTCTCCCGGTGAAACACCTGATCACGCTGCTGTTGCTGACGGTTATGCTTCTGAGGATTTTGTTCCCGGTTCTTCTTCTGCTTCCCGTGAAAGAAAAAAGGGTACTCCGTGGACTGAAGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCTAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATAAGACAAACCAATGTGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCTGATGATGCACCTGATGCTTCAATGGTACCGCAAGATTTCATGTCAGCTAATCCGCCACAGACTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCCCCGCTCGATGAAGAATGCGAATCAATGGATTCCACAAACTCAAATGATGGAGAGTCTGCCTCTGCTGCCCCATTAATGCCCGATAGCAACGCACAAGCGTCATCTTACCCACTGGTATATCCGGCATATTATTCTCCATTCTTCCCATTTCCTCTTCCCTATTGGTCTGGATATAGTCCAGAGCCGGCTCCTAAGAAGGAGACACATGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCGATCAATGTCGATGAACTTGTTGGCATGTCAAAACTGAGTTTAGGAGAGACTATTGGTGATGCAGGCCCCTCGACTTTGTCTCGTAAACTACTCGAAGAAGGACCTTCTAGACAGTCGGCATTTCATACAACTCCAGCTTGTGGGACTGTTCTGTGA 990 0.4717 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGIRKSASMGNLSHYTGSGSGSLHTGLNNPGSPGETPDHAAVADGYASEDFVPGSSSASRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDIVADDAPDASMVPQDFMSANPPQTETEGNNPLPAPPPLDEECESMDSTNSNDGESASAAPLMPDSNAQASSYPLVYPAYYSPFFPFPLPYWSGYSPEPAPKKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDAGPSTLSRKLLEEGPSRQSAFHTTPACGTVL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03253 329 FunFam transcription factor MYB1R1 97 148 - -
Trre16g03253 329 ProSiteProfiles SANT domain profile. 94 147 IPR017884 -
Trre16g03253 329 PANTHER TRANSCRIPTION FACTOR KUA1 3 276 - -
Trre16g03253 329 Gene3D - 97 149 - -
Trre16g03253 329 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Trre16g03253 329 MobiDBLite consensus disorder prediction 39 100 - -
Trre16g03253 329 CDD SANT 98 143 IPR001005 -
Trre16g03253 329 MobiDBLite consensus disorder prediction 170 224 - -
Trre16g03253 329 MobiDBLite consensus disorder prediction 39 63 - -
Trre16g03253 329 SUPERFAMILY Homeodomain-like 93 148 IPR009057 -
Trre16g03253 329 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 146 IPR006447 GO:0003677
Trre16g03253 329 MobiDBLite consensus disorder prediction 1 21 - -
Trre16g03253 329 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Trre16g03253 329 SMART sant 95 145 IPR001005 -
Trre16g03253 329 MobiDBLite consensus disorder prediction 208 224 - -
Trre16g03253 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03253 Trre-Chr16 28982466 28985512 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g03253 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03253 - - gmx:780535 550.051