Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03251 ATGGAGAGGGAAGACTCTGTCCTTTTAGAAACTCATGAACTTTGTCTTCAACCAACCACTTCCTTATCTTCATCCATTATTGTTTCCACCTCTAATTCCTCTTCAGAAGAAGAAGAAGAAGCAGCTACTAACAAAAAATTAAGCAATATTAGTAGCCAAAAAGAAAAGAAAAAGAAGAAAGTGGCAATGGTGAATAGAGTGATTCATAAAAATGATGATATGAAGCATCCAACATATAGAGGAGTAAGAATGCGTCAATGGGGCAAATGGGTATCAGAAATTAGAGAGCCAAGAAAAAAATCAAGAATTTGGCTTGGAACTTTTCCAACTCCTGATATGGCGGCTCGAGCTCATGATGTCGCGGCTCTTACTATCAAAGGCTCTTCAGCTTACCTCAATTTTCCCGAATTAGCTACGATGTTGCCACGGCCAGCTAGTGCCTCTCCTAAGGATATTCAAATCGCGGCTGCTTTGGCAGCCGCTACTACTTACAATCACCCAACCAATCAAATCGAATTGGAAGCTGAAGTCGAACCGAGCCAAGTTGTTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCATCTTCTTCTCCGGGCCATAGTGTAGGGTCATCGTTGAATGGCGAGGATGACATGTTTTTGAACCTTCCCGATCTCACACTCGATTTAAGACATAGTAATGATGGTGAGTTTTATTACTCCTCATCGGCTTGGCTTGTAACGGGAACTCAATATATAGACCCGGGTTTTCGGCTCGAAGACCCTTTTCTATGGGACTAG 777 0.417 MEREDSVLLETHELCLQPTTSLSSSIIVSTSNSSSEEEEEAATNKKLSNISSQKEKKKKKVAMVNRVIHKNDDMKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELATMLPRPASASPKDIQIAAALAAATTYNHPTNQIELEAEVEPSQVVSSSSSSSSFSSSSPGHSVGSSLNGEDDMFLNLPDLTLDLRHSNDGEFYYSSSAWLVTGTQYIDPGFRLEDPFLWD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03251 258 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Trre16g03251 258 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Trre16g03251 258 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Trre16g03251 258 Gene3D AP2/ERF domain 78 136 IPR036955 GO:0003700|GO:0006355
Trre16g03251 258 MobiDBLite consensus disorder prediction 184 203 - -
Trre16g03251 258 MobiDBLite consensus disorder prediction 184 205 - -
Trre16g03251 258 MobiDBLite consensus disorder prediction 23 37 - -
Trre16g03251 258 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Trre16g03251 258 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Trre16g03251 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 45 218 - -
Trre16g03251 258 MobiDBLite consensus disorder prediction 23 61 - -
Trre16g03251 258 FunFam Ethylene-responsive transcription factor 2 77 136 - -
Trre16g03251 258 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Trre16g03251 258 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Trre16g03251 258 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03251 Trre-Chr16 28962713 28963489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03251 71 256 AP2-EREBP Transcription Factor Family AT2G44940 51.220 2.41e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g03251 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03251 - - mtr:11413436 317.005