Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03249 ATGGCACCAAGAAAGGATGGAAAAACTAAGAAAATAATGAATAGAGGTGCATGGACCACAGAGGAAGATCAAAAGCTAGCACAATGTATTCAAACTCATGGTGCTAAGAAGTGGAAAACTGTTTCCATCAAATCAGGTTTGAATAGGTGTGGAAAAAGTTGTAGACTAAGATGGTTGAATTATCTTAGACCCAATATCAAGAGAGGGAACATATCAGAAGAAGAAGAGGATTTGATTCTTAGACTTCACAAACTTCTTGGTAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCGGGACGAACAGACAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTAAATCAAATAGAGGAAAAACCAGAAACTTCCACTACACAAGAAACTATAGCCCAGGACAATGTTGTTGAGGATAGTGCTATGTTAGAGAATAAAGATTCAGTTAATGGAAGTATTGATTTAGATGTTATCTTTGATGTGAATGAATTCTTAGACTTTTCCACTGAAGAATCATATGGGTTTGATTGGGTGAATAAATTCTTGGAGTTAGATCAGATTCAGTTTCTTGAGAACACAGAAAGATCTGAGTGA 600 0.3583 MAPRKDGKTKKIMNRGAWTTEEDQKLAQCIQTHGAKKWKTVSIKSGLNRCGKSCRLRWLNYLRPNIKRGNISEEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQIEEKPETSTTQETIAQDNVVEDSAMLENKDSVNGSIDLDVIFDVNEFLDFSTEESYGFDWVNKFLELDQIQFLENTERSE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03249 199 FunFam Transcription factor TT2 71 141 - -
Trre16g03249 199 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre16g03249 199 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Trre16g03249 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre16g03249 199 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Trre16g03249 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre16g03249 199 Gene3D - 70 141 - -
Trre16g03249 199 Gene3D - 15 67 - -
Trre16g03249 199 CDD SANT 72 113 IPR001005 -
Trre16g03249 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 137 - -
Trre16g03249 199 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre16g03249 199 SMART sant 14 64 IPR001005 -
Trre16g03249 199 SMART sant 67 115 IPR001005 -
Trre16g03249 199 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre16g03249 199 CDD SANT 17 62 IPR001005 -
Trre16g03249 199 FunFam MYB-related transcription factor 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03249 Trre-Chr16 28925824 28926717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03249 9 183 MYB Transcription Factor Family AT3G13540 46.774 5.49e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g03249 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03249 K09422 - gmx:100799575 298.901