Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g03249 | ATGGCACCAAGAAAGGATGGAAAAACTAAGAAAATAATGAATAGAGGTGCATGGACCACAGAGGAAGATCAAAAGCTAGCACAATGTATTCAAACTCATGGTGCTAAGAAGTGGAAAACTGTTTCCATCAAATCAGGTTTGAATAGGTGTGGAAAAAGTTGTAGACTAAGATGGTTGAATTATCTTAGACCCAATATCAAGAGAGGGAACATATCAGAAGAAGAAGAGGATTTGATTCTTAGACTTCACAAACTTCTTGGTAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCGGGACGAACAGACAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTAAATCAAATAGAGGAAAAACCAGAAACTTCCACTACACAAGAAACTATAGCCCAGGACAATGTTGTTGAGGATAGTGCTATGTTAGAGAATAAAGATTCAGTTAATGGAAGTATTGATTTAGATGTTATCTTTGATGTGAATGAATTCTTAGACTTTTCCACTGAAGAATCATATGGGTTTGATTGGGTGAATAAATTCTTGGAGTTAGATCAGATTCAGTTTCTTGAGAACACAGAAAGATCTGAGTGA | 600 | 0.3583 | MAPRKDGKTKKIMNRGAWTTEEDQKLAQCIQTHGAKKWKTVSIKSGLNRCGKSCRLRWLNYLRPNIKRGNISEEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQIEEKPETSTTQETIAQDNVVEDSAMLENKDSVNGSIDLDVIFDVNEFLDFSTEESYGFDWVNKFLELDQIQFLENTERSE | 199 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g03249 | 199 | FunFam | Transcription factor TT2 | 71 | 141 | - | - | |
Trre16g03249 | 199 | Pfam | Myb-like DNA-binding domain | 15 | 62 | IPR001005 | - | |
Trre16g03249 | 199 | Pfam | Myb-like DNA-binding domain | 68 | 113 | IPR001005 | - | |
Trre16g03249 | 199 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 10 | 62 | IPR017930 | - | |
Trre16g03249 | 199 | SUPERFAMILY | Homeodomain-like | 14 | 109 | IPR009057 | - | |
Trre16g03249 | 199 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 63 | 117 | IPR017930 | - | |
Trre16g03249 | 199 | Gene3D | - | 70 | 141 | - | - | |
Trre16g03249 | 199 | Gene3D | - | 15 | 67 | - | - | |
Trre16g03249 | 199 | CDD | SANT | 72 | 113 | IPR001005 | - | |
Trre16g03249 | 199 | PANTHER | TRANSCRIPTION FACTOR MYB8-RELATED-RELATED | 9 | 137 | - | - | |
Trre16g03249 | 199 | ProSiteProfiles | Myb-like domain profile. | 10 | 62 | IPR001005 | - | |
Trre16g03249 | 199 | SMART | sant | 14 | 64 | IPR001005 | - | |
Trre16g03249 | 199 | SMART | sant | 67 | 115 | IPR001005 | - | |
Trre16g03249 | 199 | ProSiteProfiles | Myb-like domain profile. | 63 | 113 | IPR001005 | - | |
Trre16g03249 | 199 | CDD | SANT | 17 | 62 | IPR001005 | - | |
Trre16g03249 | 199 | FunFam | MYB-related transcription factor | 14 | 67 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g03249 | Trre-Chr16 | 28925824 | 28926717 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g03249 | 9 | 183 | MYB Transcription Factor Family | AT3G13540 | 46.774 | 5.49e-53 | 168 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Trre16g03249 | Myb_DNA-binding | 1e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g03249 | K09422 | - | gmx:100799575 | 298.901 |