Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03215 ATGAGGAATTCGGGGATTATGAATGATGTGGTTATAATTGGAGGGTTAATTTCTACACAATTTGTTTATGCTGGAAATGCTATGCTCATGAGTTATCTTATGTCTTTGGGTCTTCAATGTTTTACCATTGTTATTTACACTTCCTTTGCAACATTTCTAATTCTCCTACCCTTTGTTCTTTATTTTGAAAGAAGTAAATGGCCCAAGAGAATCAGTTTCAAGTTGATCGTACAATTTCTCCTCCTTGCTCTTGGAGGTGTAACTTTGTTCCAATCTTTATTCCTTAAAGGAATCAATCTAACCTCACCAGCAATGGGAACAGCCATGCCAAACCTTGCACCAGGAATTATCTTCATCATCGCGTGGACTTTCCGGTTGGAAAAAGTGGACTTAAGGTGCACATATAGTAGAGTAAAAATAACTGGCACATTGCTTTGTGTCTTAGGGGCATTCACTATGAGCTTAATGCAAAGTATCTCAATTTCTTTACCAATTGAAGGATTAAAATTTCAATTAACAACTCCACCACCACCGGTTGTAATGTTTGATAGAGACAAGATAATTGGTTGTCTCTATCTCTTGGCTTCAATCCTTGTTCTCTCTGTCACCGTTGTTCTACAGGCATTTACTCTAGGAGAATTTCCTGCACCAATGTCTTTGAGTGCAATAACATCATTTTTTGGAGGGTTGATCACTACAGCAGCTCAATTAATTGAATATCATGAAATTAAAACTGGGTGGCCACTAGTGAGTGCTGGTGACATGATTGGCTATTCTGTTCTGTCAGGTGCAGTGAATGGAATAGGATTAAGCTTCAGTGCTTGGGCACTTGAGAAGAGAGGGCCAGTTTTGGTATCCATGTTCAGTCCTGTTGGCACAGTTTGCTCTGTCATTTTCTCTATTGTCACTCTAGGAGATAGTACAGTTAATATTGGAAGCATAGCGGGTATGTTCCTGATGTTCACTGGGCTCTACTTTGTGCTTTGGGCCAAAGGGAAAGAAGATGGTTTAGAGAGTGAATTAGATGCAGAGAAGCCTCTCTTAAGTTGA 1050 0.3943 MRNSGIMNDVVIIGGLISTQFVYAGNAMLMSYLMSLGLQCFTIVIYTSFATFLILLPFVLYFERSKWPKRISFKLIVQFLLLALGGVTLFQSLFLKGINLTSPAMGTAMPNLAPGIIFIIAWTFRLEKVDLRCTYSRVKITGTLLCVLGAFTMSLMQSISISLPIEGLKFQLTTPPPPVVMFDRDKIIGCLYLLASILVLSVTVVLQAFTLGEFPAPMSLSAITSFFGGLITTAAQLIEYHEIKTGWPLVSAGDMIGYSVLSGAVNGIGLSFSAWALEKRGPVLVSMFSPVGTVCSVIFSIVTLGDSTVNIGSIAGMFLMFTGLYFVLWAKGKEDGLESELDAEKPLLS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03215 349 Pfam EamA-like transporter family 17 154 IPR000620 GO:0016020
Trre16g03215 349 Pfam EamA-like transporter family 188 328 IPR000620 GO:0016020
Trre16g03215 349 PANTHER WAT1-RELATED PROTEIN 15 335 IPR030184 GO:0016020|GO:0022857
Trre16g03215 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 155 - -
Trre16g03215 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03215 Trre-Chr16 28702456 28705420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03215 3 340 Nodulin-like Gene Family AT5G47470 58.112 1.48e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03215 - - mtr:11409967 597.43