Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03212 ATGCTTGTTGAGAGAGAAAAAGAGAGAGAGAGAGAGAATAAGAAAAGAAGAGTAAGAGAAACAAAAAGTGTTGTTGAAGTTGGTGTTGTTGCTGCTATGGAAAGACACAAATGCAAGCTATGTTCAAGAACATTTGGTAATGGAAGAGCACTTGGTGGTCACATGAAAGCTCATCTTGCTACAATTAAGTCTCAAAAACAACAATTCACTCAATTTTCTTCTTTCTCATCATCAGAATCAGAATCAGAACCAGAACAAGAAGATGAAGAAGAAAAAACTCTGATTAATTATGTTCTGAGAGAGAATCCAAAGAAAAGTCTGAAAATTGCAGATCCTGAATTTTCTTTCATACCTGATCAGACTGAGTCTGTTATTGTTCAAGACAGAGAAAGTGAGACTGATTCAAAAAACAACCCGACTCGTCAACAACTATCCAAACGGAACAGAAAACAGAACAACAATAACAGCAACAACAACCAGAATTTTCCAGAACGGAAAAAATCAAAGTCGAGTTTTACCATGTTAACAACACCACCACCACCATCATTCAATGATCAAGAACCTGTTAGTTCAGTTTCTGATACTTCACCTGAAGAAGATGTTGCTATGTGTCTCATGATGCTTTCGAGAGACAAATGGAGTAGAGAAATGAACATTAACAATGTGGTTGAAGTTGAAGAGGAAGAAGAGGGATCGGTGGAGAAAATATCGAAAGTGAAGTTGTTGAAACGAGTTCGTGGGAAACATTTATGTGAAAATTGTAGAAAATCATTTCGATCTTCGAGAGCATTGGGAAGTCATAGAAGTGTTTGTTGTCGCAATGAAGCGAAGAATGCTAATGGTAATCGTAACGATGATAAGATTTTTGAATGTCCATTTTGTTTTAAGGTTTTTGGTTCTGGTCAAGCACTTGGTGGTCATAAGAGATCTCATCTCATGATCCCTTCTTCATCAAATTCTACCGCTAATGCTAATGCTAATGCTGATGCTGATGTTGATGCTTCTGTTAGATTCAAAGAGAGTTTCATAGATCTCAATTTGCCGGCTCCACTTGAAGAAGAAGAAGATGATCTTAGTGTTGTTTCTGATGCCTAA 1095 0.3699 MLVEREKERERENKKRRVRETKSVVEVGVVAAMERHKCKLCSRTFGNGRALGGHMKAHLATIKSQKQQFTQFSSFSSSESESEPEQEDEEEKTLINYVLRENPKKSLKIADPEFSFIPDQTESVIVQDRESETDSKNNPTRQQLSKRNRKQNNNNSNNNQNFPERKKSKSSFTMLTTPPPPSFNDQEPVSSVSDTSPEEDVAMCLMMLSRDKWSREMNINNVVEVEEEEEGSVEKISKVKLLKRVRGKHLCENCRKSFRSSRALGSHRSVCCRNEAKNANGNRNDDKIFECPFCFKVFGSGQALGGHKRSHLMIPSSSNSTANANANADADVDASVRFKESFIDLNLPAPLEEEEDDLSVVSDA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03212 364 ProSitePatterns Zinc finger C2H2 type domain signature. 291 311 IPR013087 -
Trre16g03212 364 MobiDBLite consensus disorder prediction 137 197 - -
Trre16g03212 364 Coils Coil 141 161 - -
Trre16g03212 364 MobiDBLite consensus disorder prediction 70 91 - -
Trre16g03212 364 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Trre16g03212 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 311 IPR013087 -
Trre16g03212 364 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 33 364 IPR044303 GO:0006355
Trre16g03212 364 SUPERFAMILY beta-beta-alpha zinc fingers 249 311 IPR036236 -
Trre16g03212 364 SMART c2h2final6 289 311 IPR013087 -
Trre16g03212 364 SMART c2h2final6 249 269 IPR013087 -
Trre16g03212 364 SMART c2h2final6 36 58 IPR013087 -
Trre16g03212 364 MobiDBLite consensus disorder prediction 120 198 - -
Trre16g03212 364 Pfam C2H2-type zinc finger 289 311 - -
Trre16g03212 364 Pfam C2H2-type zinc finger 35 60 - -
Trre16g03212 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 58 IPR013087 -
Trre16g03212 364 Gene3D Classic Zinc Finger 246 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03212 Trre-Chr16 28680627 28681721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03212 33 361 C2H2 Transcription Factor Family AT3G60580 35.860 3.59e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g03212 zf-C2H2_6 1.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03212 - - tpra:123884584 462.225