LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g03198	ATGAGTTCAACATCCTCACGGCGCATGTTCCAGCTCAAGCTCGACCCTTTAACCGGTAACTCCGAATGGGTCATCATCGAGGAAAACAACAACGACGAAGAACAAAGCTTCCACCAACCCCTTCTCGCCACAACATCGTATTTAGACATGCTCAATGATTCAACCAGAAACACAGCATTTCGTCAATCCATTGAAAAAACAGTAACCAAACCTTGTCATGTTCTCGATATCGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTTCACGAGCTATGAATGGGAAAGGAACGGTAACTGCTTGTGAATCTTATCTTCCAATGGTGAAGTTGATGAAGAAGGTTATGCGACTTAATGGGATGGAAGGAAAAATCAAAGTTTTCAATAAGCGCTCTGATGAACTTGAAGTCGGAATTGATATATCTTCGCTTGCTGATGTTCTTGTGAGCGAGATATTAGATTCAGAGTTATTGGGTGAGGGGCTTATACCAACCCTACAACATGCACATGACAATTTGTTGGTGGAAAACCCTCTAACTGTACCATATCGAGCAACTACATATGGACAGCTAGTTGAAAGCACTTTCTTATGGCGATTGCATGATTTGCGTAGCAATGAGGCTGGTGCATCTGATGGCATTCGACTTGCCCCTCCTGGACTTGAAAATGTTATAGGTGTAAAACGTCAGCAATATGCCATGCATTGCGATCGAATAGGAGAAGAACTGAAACCGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTACGGCGAAACTGAGCTATGCATAAAGGCAACTGATGATGGCAGAGTTCATGCTGTTGTCTCTTGGTGGGTACTTCAACTTGATCGCGAGGGGACAATTTATTATTCCACGGCTCCTAGGTGGATAAGATCATCAACAACTACAAGTCCTGTTGAATGGTGCGACCACTGGAAACAGTGTGTTTGGTTTGTTCCAGGGAGTGGTATATCCATATCCAAAGGGGGAGAAATTGATTTACATGCTACTCACGATGATATTAGTATCTCATATAATTTAAATACTCAAGTGTCAACAACTGAGATTTTGCATGACGGTTTAACGACCGGAGATTTCCAGCTTTTACTTCCTCCAGAAAGAGCTGCAATCTATGGCGACGAAGAATGGAGGCTTTCGATGTTGAAAGCAGTAAAAAGTGTGTTGCAGGGAAGAGGTCACTTGTTATGCTTGGTTGCAGATGATAGTGTGTATTTGCCTCTTCTTGTTGCAAAGCTTTCAGAAGCACCAAATGTAATATCATCTTTTTCGAGGCTGAAGGAAAAGAGCCTCCAATATTTGCAAGCTGCTGTCCGTGCAAATAACCTGCCACCTAATTCCATAAAAACTGTTGAAAAAGGGGTGAAGCAGTTAACCATGCATGATACACACCAGAAAAAGGTTGACCTGTTAATAGCAGAACCTTTCTATTTTGGACATGATGGCATGCTTCCATGGCAGAATCTGCGGTTTTGGAAGGATCGTACAACACTTGATTATATCCTCTCTGAAGATGCTATAATAATTCCCAGTAAAGGAATTTTGAGGGCTTGTGCCATCTATCTTCCTGATCTTTGGAAAAGTCGTTCCTGCTTGAGTAAGATAGAAGGTTTCGACCATTCTGGTGTAAACACTACATTGGGAGCTTGCGGTCATCTACCTGAATTGGAAGAGGGTCCTTGTCTGCCTTTTTCTCTTTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAGACATTTGTTGTGATGGAGTTTGATTTCACAAAACAAATATGCCAATGTGAAGGAAAATCCCAGGTTAAATTCATGAAGACAGGAGTATGTCACGGGTTTGTGCTGTGGATTGACTATGTGATGGATTCGCGAAATTCTGTTGTGATATCAACTGGTCCAGATAAGAGATATTGGAAACAAGGAATAAAGCTTCTTGCAACACCTAGAACTGTAGGACCCCAAGGATCAACAAATGTCCTAGGATGTTGTTCTGCAGATCTTGAAGCATCTTTTAATCCATCAAATGGGGAACTCAAAATTATACTTGATTTCTTATGA	2088	0.4176	MSSTSSRRMFQLKLDPLTGNSEWVIIEENNNDEEQSFHQPLLATTSYLDMLNDSTRNTAFRQSIEKTVTKPCHVLDIGAGTGLLSMMASRAMNGKGTVTACESYLPMVKLMKKVMRLNGMEGKIKVFNKRSDELEVGIDISSLADVLVSEILDSELLGEGLIPTLQHAHDNLLVENPLTVPYRATTYGQLVESTFLWRLHDLRSNEAGASDGIRLAPPGLENVIGVKRQQYAMHCDRIGEELKPLSEPFKIFEFDFWKRPESYGETELCIKATDDGRVHAVVSWWVLQLDREGTIYYSTAPRWIRSSTTTSPVEWCDHWKQCVWFVPGSGISISKGGEIDLHATHDDISISYNLNTQVSTTEILHDGLTTGDFQLLLPPERAAIYGDEEWRLSMLKAVKSVLQGRGHLLCLVADDSVYLPLLVAKLSEAPNVISSFSRLKEKSLQYLQAAVRANNLPPNSIKTVEKGVKQLTMHDTHQKKVDLLIAEPFYFGHDGMLPWQNLRFWKDRTTLDYILSEDAIIIPSKGILRACAIYLPDLWKSRSCLSKIEGFDHSGVNTTLGACGHLPELEEGPCLPFSLWQCGEFDVLSETFVVMEFDFTKQICQCEGKSQVKFMKTGVCHGFVLWIDYVMDSRNSVVISTGPDKRYWKQGIKLLATPRTVGPQGSTNVLGCCSADLEASFNPSNGELKIILDFL	695

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g03198	695	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	27	351	IPR025799	GO:0016274\|GO:0018216
	Trre16g03198	695	Gene3D	-	183	365	-	-
	Trre16g03198	695	PIRSF	Arg_N-mtase	7	691	IPR014644	GO:0006479\|GO:0008168
	Trre16g03198	695	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	361	695	IPR025799	GO:0016274\|GO:0018216
	Trre16g03198	695	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	444	665	IPR025799	GO:0016274\|GO:0018216
	Trre16g03198	695	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	441	665	IPR029063	-
	Trre16g03198	695	Pfam	Ribosomal protein L11 methyltransferase (PrmA)	62	154	-	-
	Trre16g03198	695	FunFam	Protein arginine N-methyltransferase 1.6	183	367	-	-
	Trre16g03198	695	FunFam	Protein arginine N-methyltransferase 1.6	527	694	-	-
	Trre16g03198	695	FunFam	Protein arginine N-methyltransferase	40	182	-	-
	Trre16g03198	695	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	47	343	IPR029063	-
	Trre16g03198	695	Gene3D	-	527	694	-	-
	Trre16g03198	695	Gene3D	Vaccinia Virus protein VP39	40	182	IPR029063	-
	Trre16g03198	695	FunFam	Protein arginine N-methyltransferase 7	373	523	-	-
	Trre16g03198	695	Gene3D	Vaccinia Virus protein VP39	375	523	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g03198	Trre-Chr16	28537680	28542922	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g03198	47	187	C2H2 Transcription Factor Family	AT3G12270	31.333	1.23e-10	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g03198	K11438		-	gmx:100785846	1131.32