Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03162 ATGATCATAAAATTGAAATCACAGTCTGTTTCACAGGAATTGAAGCCAGGGGTTTTATTTTTTATAGGAGCAAAATTTGTACCATTGAGGAAACCAAAAAAGTTGCCTGGGAAAGTTATTTCTCAAGAGTATACATTGGAATATGGAAGGGACTGTCTTGAGATGCATGTTGGAGGAGTTGAACATGGTGAACGTGCTTTGGTAGTTGATGATTTGATTGCTACAGGTGGAACACTTTGTGCAGCTATGGACTTGCTAGAATGTGAGGGAGCAAAGATAGTTGAGTGTGCATGCGTAATTGATTTACCAGAATTAAAGGGTCGTGAACGGTTGAATGGAAAACCCTTGTATGTGTTAGTCGAAAGTTTTTGA 372 0.3871 MIIKLKSQSVSQELKPGVLFFIGAKFVPLRKPKKLPGKVISQEYTLEYGRDCLEMHVGGVEHGERALVVDDLIATGGTLCAAMDLLECEGAKIVECACVIDLPELKGRERLNGKPLYVLVESF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03162 123 Gene3D - 10 122 IPR029057 -
Trre16g03162 123 CDD PRTases_typeI 22 121 IPR000836 -
Trre16g03162 123 SUPERFAMILY PRTase-like 21 116 IPR029057 -
Trre16g03162 123 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 20 122 - -
Trre16g03162 123 Pfam Phosphoribosyl transferase domain 48 109 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03162 Trre-Chr16 27905065 27908033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03162 16 122 PRT Gene Family AT1G27450 71.028 1.10e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03162 K00759 - gmx:100306411 188.734