Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03161 ATGGATTTGAAGCCTTCTCATGTTTCTCCAATTCTTACCGATCCTGTTCCTGCCAACAAGTCAAGGCTTGGAATCCATTCTAGTTTGTTAGCTTATTCGCAACAAGATTCACCATTATCGAATTCAGGGAAGTACACAAAATCAAATTCAAAGAAAAATATGGGAAATCTTGACGATGTTAGGTCTAATGGCTGGTTGGATGCTATGAAGGCATCTTCGCCTCCAAGGAAGAAGTCGACACATAAAGGTTCGAGTGCTCAGGTTGCTTCAATTGACTATGACGTTGAAGATTATAATTTATGGATGCTAGGATATCCTTCAGCTCTAGACGCTTTCGAGAAAATTGTTGACCGCGCAAAGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACTCTTTCGCCTATAGTAGAGGATCCAGATTGTGCCTTTATGTCTGAACCTATGCGAACAACGGTGCGAAGTGTGGCGATGTATTTCCCTACCGCCATCATTAGCGGAAGAAGTCGTGACAAGGTTTTTGATTTAGTTAAACTAACAGAACTCTACTATGCCGGTAGTCATGGGATGGACATTATCGGCCCTGTTAGTGACACTTTGTCCGTAAACCATCCAAATTGTATCAAGTCTACTGACCAACAGGGAAAGGAGATAACTCTCTTTCAACCGGCAAGAGAATTCCTTCCTATGATTGATGAGGTTTTTAAAACCCTCATCGAGATTACTAAAGATATAGAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGTCTCTGTACATTACCGTAATGTAGAAGAGAATAATTGGACAACAATAGCACAACGTGTCCATGATATCATAAAGAATTATCCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAATCCGTCCTGTGATTGACTGGAACAAAGGAAAAGCAGTTGAGTTTTTGCTTGAATCTCTAGGGTTGACTGATAGGAATGATGTGCTTCCCATTTACATTGGAGATGATAAAACTGATGAAGATGCATTTAAGGTGCTGAAGGAGAGCAATCGAGGTTATGGGATATTGGTTTCATCAGCGAGAAAAGAAAGCAATGCTTTCTACTCTCTCCGAGACCCTAATGAGGTCATGAAATTTCTTCAACTCTTGGTTAATTGGAAGAGGGGCCAAGAAACAGCATGTGAAGAAATAAAGCTCATATAA 1194 0.402 MDLKPSHVSPILTDPVPANKSRLGIHSSLLAYSQQDSPLSNSGKYTKSNSKKNMGNLDDVRSNGWLDAMKASSPPRKKSTHKGSSAQVASIDYDVEDYNLWMLGYPSALDAFEKIVDRAKDKKIAMFLDYDGTLSPIVEDPDCAFMSEPMRTTVRSVAMYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSDTLSVNHPNCIKSTDQQGKEITLFQPAREFLPMIDEVFKTLIEITKDIEGAKVENHKFCVSVHYRNVEENNWTTIAQRVHDIIKNYPRLRSTHGRKVLEIRPVIDWNKGKAVEFLLESLGLTDRNDVLPIYIGDDKTDEDAFKVLKESNRGYGILVSSARKESNAFYSLRDPNEVMKFLQLLVNWKRGQETACEEIKLI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03161 397 FunFam Trehalose 6-phosphate phosphatase 231 390 - -
Trre16g03161 397 NCBIfam HAD-IIB family hydrolase 126 345 IPR006379 -
Trre16g03161 397 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 40 390 IPR044651 GO:0004805|GO:0005992
Trre16g03161 397 SUPERFAMILY HAD-like 125 383 IPR036412 -
Trre16g03161 397 MobiDBLite consensus disorder prediction 67 86 - -
Trre16g03161 397 NCBIfam trehalose-phosphatase 122 381 IPR003337 GO:0003824|GO:0005992
Trre16g03161 397 Gene3D - 225 394 IPR023214 -
Trre16g03161 397 Gene3D - 124 212 IPR023214 -
Trre16g03161 397 MobiDBLite consensus disorder prediction 35 59 - -
Trre16g03161 397 Pfam Trehalose-phosphatase 127 370 IPR003337 GO:0003824|GO:0005992
Trre16g03161 397 FunFam Trehalose 6-phosphate phosphatase 225 301 - -
Trre16g03161 397 CDD HAD_TPP 125 375 - -
Trre16g03161 397 MobiDBLite consensus disorder prediction 35 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03161 Trre-Chr16 27862712 27865575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03161 122 377 Trehalose Biosynthesis Gene Families AT1G23870 22.662 1.23e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03161 K01087 - tcc:18606311 560.836