Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03152 ATGTATGGGAGAAAAGCTTGCCAACTTGTGAAAGAATTTGCAAGTGGAGAAAAGGGTCAGCTCACACCATTTAATAATGACTTGTTTGACCAAGTAGTTGCAGAATGCAACCAACATCACGGTGAGCTTCAGAAGATGCAGGAAGAAGGTTTGGATGTCCAGACGGCTAGAAATGCTGACCACTACGGAGCCCTCATCCACCTATTTTCTATAGTCCGAAATAAACGTTGTCTAACAGCCTATGTGTATAACCGAGCAGAAACTATACGGAACTTGTTATGGAAGATAGGTCCCATGATTCCTAAAGAAATTGAAGAGAAGCTTAGTCATTGGGAGGAAGAGTATTTCAAGAAGCATTCTGCAGCATTGAAAACTTATATGTCAAAAGTGCTGGTTGATCTGACTGTGGATATGGTACCACCAAAAGATCCATACATACAAGTAAGGGTCCTTGAAGACATAAGAGAAGGCATTGTACTTAGTGATGCTAAAAATCCCAACTTTGCCCGACATTCCATGCACTTTCTGAAACGGACTGATGCTGAGAAATATATCTCAAGGGTAATTTTCTTGTAG 576 0.408 MYGRKACQLVKEFASGEKGQLTPFNNDLFDQVVAECNQHHGELQKMQEEGLDVQTARNADHYGALIHLFSIVRNKRCLTAYVYNRAETIRNLLWKIGPMIPKEIEEKLSHWEEEYFKKHSAALKTYMSKVLVDLTVDMVPPKDPYIQVRVLEDIREGIVLSDAKNPNFARHSMHFLKRTDAEKYISRVIFL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03152 191 Gene3D - 1 130 - -
Trre16g03152 191 PANTHER PARTNER OF SLD5 1 189 IPR005339 GO:0000811|GO:0006260
Trre16g03152 191 SUPERFAMILY GINS helical bundle-like 1 142 IPR036224 -
Trre16g03152 191 Pfam GINS complex protein 32 112 IPR021151 -
Trre16g03152 191 CDD GINS_A_psf1 3 130 IPR005339 GO:0000811|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03152 Trre-Chr16 27740168 27742062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03152 1 187 Core DNA Replication Machinery Family AT1G80190 66.495 4.97e-94 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03152 K10732 - qsu:112021696 304.293