Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g03151 | ATGAAAAGCAAAGTCAGTGGTCTTTGTTTGATGGACTACAGTCATGATGAATATGAAGCAGCTGATGGTCTTGTTTTATTGCAAACATTGTTCGAAATGAAGAAGCCCGTTAGAAAACTGAAAATTACTTTTGGAGGTAAAAGAAATTGTGAAGAAACCTACAACAATGTTCGTTCGGTCGTTTCAAATAACAAGGTTAGTTCATCGCCACAAATCATTGTTCCTAATGTTGTTATGGGATATGAAGACAACCCTCCAAATATACCAACGATTCCTAGTGTGGCGAACAATAATATTCTTGGATGTTGCAAACCTTTTGAGAAGAAATTATCAACGAGTGATTTGAAGGTGGATTTAAACAGATTGTTTTTGGACAAGGGCCATGTGAAAAAATATTTTTTACCCTTGTTGAAAGAAGACGAAGATGTTGAAGAAGGAATAGATGTCGTTGTGTATGACATGCAAGGCAAAACGTTCAACATGAAGTTCAAGTTTTGGAGCGGAAAATTTTATGTTCTCAATGGAGGGTGGAAGACTTTCTTCAAATCGCATTCTTTGCGAGCAAATCATGATCATGTTATAGTGTGGATGTTTCGTCTTTCTGAAACCGGTAATTTGTGTTTTGCTCTTAGTGTGAAAAGAGTGTAG | 648 | 0.3642 | MKSKVSGLCLMDYSHDEYEAADGLVLLQTLFEMKKPVRKLKITFGGKRNCEETYNNVRSVVSNNKVSSSPQIIVPNVVMGYEDNPPNIPTIPSVANNNILGCCKPFEKKLSTSDLKVDLNRLFLDKGHVKKYFLPLLKEDEDVEEGIDVVVYDMQGKTFNMKFKFWSGKFYVLNGGWKTFFKSHSLRANHDHVIVWMFRLSETGNLCFALSVKRV | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g03151 | 215 | PANTHER | B3 DOMAIN PLANT PROTEIN-RELATED | 83 | 212 | IPR005508 | GO:0003677 | |
Trre16g03151 | 215 | SMART | B3_2 | 106 | 214 | IPR003340 | GO:0003677 | |
Trre16g03151 | 215 | Gene3D | - | 102 | 215 | IPR015300 | - | |
Trre16g03151 | 215 | SUPERFAMILY | DNA-binding pseudobarrel domain | 106 | 205 | IPR015300 | - | |
Trre16g03151 | 215 | Pfam | B3 DNA binding domain | 106 | 190 | IPR003340 | GO:0003677 | |
Trre16g03151 | 215 | ProSiteProfiles | B3 DNA-binding domain profile. | 107 | 214 | IPR003340 | GO:0003677 | |
Trre16g03151 | 215 | CDD | B3_DNA | 106 | 208 | IPR003340 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g03151 | Trre-Chr16 | 27732988 | 27733635 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g03151 | 104 | 210 | B3 DNA Binding Superfamily | AT4G03170 | 44.444 | 2.54e-22 | 89.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Trre16g03151 | B3 | 8.9e-09 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g03151 | - | - | tpra:123915381 | 332.413 |