Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03147 ATGTTGGAGCTTCCGGAATGGACAGATATTGTGAAGACTGCAAAGTTTAAGGAGTTGGCTCCTTATGATCCTGACTGGTACTATATCAGAGCTGCTTCCATGGCAAGGAAGATATACATTAGGGGAGGACTCGGTGTTGGTGCTTTCCAGAGGATTTATGGTGGAAGCCAGAGGAACGGTAGTCGTCCACCTCATTTCTGCAAGAGCAGTGGTGCTATTGCTCGTCACATTCTTCAGCAATTGCAGAACGTGAATATCATTGAGATGGACACCAAGGGTGGCAGGAAAATCACTTCCAATGGAAGGAGGGAATTGGACCAAGTTGCCGGACGGATTGTGGTTGCTCCTTGA 351 0.4758 MLELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKIYIRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNVNIIEMDTKGGRKITSNGRRELDQVAGRIVVAP 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03147 116 ProSitePatterns Ribosomal protein S19e signature. 63 82 IPR018277 GO:0003735|GO:0005840|GO:0006412
Trre16g03147 116 FunFam 40S ribosomal protein S19 1 116 - -
Trre16g03147 116 Gene3D - 1 115 IPR036388 -
Trre16g03147 116 SMART Ribosomal_S19e_2 1 115 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre16g03147 116 SUPERFAMILY "Winged helix" DNA-binding domain 2 114 IPR036390 -
Trre16g03147 116 PANTHER 40S RIBOSOMAL PROTEIN S19 2 112 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre16g03147 116 Pfam Ribosomal protein S19e 2 113 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03147 Trre-Chr16 27717085 27718114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03147 2 116 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 82.609 7.90e-73 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03147 K02966 - gmx:100499800 226.868