Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03146 ATGAAACAAAAAAGTTCTATAGTTTCCAAGATGAAAAGCAAAGTCAGTGGGTTTTACTTGATGGACTTCAGTCCTGATGAATATGAAGCAGCTGATGGTCTTGTTTTATTGCAAACACTGTTTGAAAAGAAGAAGATTGCTAGAAAACTGAAAATTACTTTTGGAGGCCAAAAGATTTGTGAAAAAACCTACAACAACAATGTTTGTTCGGTCGTTTCAAATAACAAGGTTAGTTCATCACCACAAATCATTGTTCCTAATGTCGTTATGGGAAATGAAGAGAACACATCAAATATACCAACGATTCCTGGCGTGGCGAACAATAATATTGTTGGGTGTTGCAAGCCTTTTGAGAAGAAACTATCAACGAGTGATTTGAAGGTTGATCTAAATAGATTATTTTTGGATAAGGGCCATGTGAAAAAATATTTTTTACCCTTGTTGAAAGAAAGTGAAGATGTTGAAGAAGGAATAGACGTCGTTGTATATGACATGCAAGGCAAAATGTTCAACATGAAGTTCAAGTTTTGGAGCGGAAAATTTTATGTTCTTAATGGAGGGTGGAAGACTTTCTTCAAATCACATTCTTTGCTAGCAAATCAAGATCATGTTACAGTGTGGATGTTTCGTCATTTTGAAACCGGCAATTTGTGTTTTGCTCTCGGTGTGAAAAGAGTGTAG 681 0.3554 MKQKSSIVSKMKSKVSGFYLMDFSPDEYEAADGLVLLQTLFEKKKIARKLKITFGGQKICEKTYNNNVCSVVSNNKVSSSPQIIVPNVVMGNEENTSNIPTIPGVANNNIVGCCKPFEKKLSTSDLKVDLNRLFLDKGHVKKYFLPLLKESEDVEEGIDVVVYDMQGKMFNMKFKFWSGKFYVLNGGWKTFFKSHSLLANQDHVTVWMFRHFETGNLCFALGVKRV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03146 226 Gene3D - 112 226 IPR015300 -
Trre16g03146 226 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 88 222 IPR005508 GO:0003677
Trre16g03146 226 SUPERFAMILY DNA-binding pseudobarrel domain 117 213 IPR015300 -
Trre16g03146 226 SMART B3_2 117 215 IPR003340 GO:0003677
Trre16g03146 226 CDD B3_DNA 117 219 IPR003340 GO:0003677
Trre16g03146 226 Pfam B3 DNA binding domain 117 200 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03146 Trre-Chr16 27716060 27716740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03146 115 221 B3 DNA Binding Superfamily AT4G03170 47.222 1.54e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g03146 B3 9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03146 - - tpra:123915381 362.844