Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03145 ATGGAAGATAATGAATGGAATCACTATGATCCTCTTCTTCTCACTGACGTTTCTTTTCAACAACAACAAACCATTTCCACTAGTGTTTCACAATTATCTCTTAGCTCTCTGAATTCAGCTATGGAGGCTGATCCCCAATCTTGTGGTGGAAACCCTAGTTATGGATTGTCTCCGGAAAATGAAAGCTTTGAAAGAAACAGTTTGCAATTTGATGATCCAATAGTGAAAAATTTAGTTGATGGACGATCGATATTAGGGTATTCTATGAATTCACCAGATTTGGTGATCTGTTCTAGCTCACCAGATATTGCTGGAATCAGTTATTGTGATTCTCCTGAGATTTTGAAGAGCAAAAATTGCTTCAATTTGGATTCATCTATGGAGCTTTCTCTTGAGAATGGAATCAATGCATCTGAAGTTGAAGTTTGCAATGTCCATAAGACTCCTACTGTTAAATTTTCCAATTTGTGCCAAACTATTGAACCGGAGGAAGAGTTACTATCACCTGAAGCCTCATTCGAGCTTCATCCGCCACCGATAACAAACGACGAGTCGCCTCGAGATTACTCTCTTAGAGATAATGAAATGTTGGAAGATGCTAGAGTGTCTCAGGAGGCAGAATTGGAATGCTCAGAAGATGTTGAAGATATTATGGTAGAAGAGAAGTTTTTGAAGCTGAAAAGAGATTTCGAGTGTCAGAGAAAAGAGCTGGCAGTAACTAGGAGGGAGTTGGGGGAGCTCAAGAAGGAGAATCAACAGAAAAGCAGTGAATGTCATGAAGCTTTGAAGTCCTTAAAGGAGCTTCAGAATGAGCTAATGCGCAAGTCGATGCACGTAGGATCTTTAGCATTTGCTATTGAAGGGCAAGTGAAAGAGAAAAGCAAGTGGTTTATATCACTAAGAGACTTGACGAGGAAATTGAAGATTATGAAAATGGAACACATGAAGCTATTAGAGGAAGCAGAAGCATACAAGAAATATGAAGCAGATATAAGTGAATTTGGAGTCATCATCAAGTCTAAAATGAATGAACAACTAGCGTCACATGAAGATCTCAAGTCCAAATATATTGAAGGGGCTAAGGTTCAAAAAGAGCTTTACAATAAGGTATTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGGTGTAGGCCACTCAATGCCGAAGAGATAAAAGGAGGAGCCGCAATGGCCTTAGATTTTGATTCTGCTAAAGATGGCGAGCTTACTGTAATGTCAAATGGATCTCCAAAAAGGACTTTTAAGTTTGATGCTGTGTTTGGCCCTCAAGTTGAACAAGCTGATATCTTTGAAGACACTGTACCATTTGCAACCTCAGTTTTAGATGGATACAATGTATGCATTTTTGCATACGGACAGACTGGTACAGGAAAAACCTTCACAATGGAGGGCACAGAAGACGCTCGCGGAGTTAATTTCAGGACTCTTGAGAAAATGTTTGATATAATCAAGGAAAGACAATCCCTCTATCGTTATGATATTTCCGTAAGTGTCTTAGAAGTGTACAACGAGCAAATAAGAGATTTGCTGGTTTCAGGAAATCATCCAGGAATGTCTGGAAAAAGATTGGAGATAAGGCAATCTGGTGAAGGAATGCATATTCCGGGGTTGGTCGAAGCACATGTGAACAACATGACTGAAGTGTGGGAAGTCCTACAAACTGGTAGCAATGCAAGGGCTGTAAGCTCAACCAATGCGAACGAGCACAGTAGCCGATCTCACTGCATTCACTGTGTCATGGTTAAGGGAGAAAATCTGTTGAATGGAGAACATACAAGAAGCAAGTTATGGCTTGTGGACTTAGCAGGCAGTGAAAGAGTTGCAAAGACAGAAGTTCAAGGTGATAGATTGAAGGAGACACAAAATATTAATAGATCTCTTTCCGCACTTGGTGATGTCATTTCAGCTCTTGCAACTAAAAGTTCTCACATCCCTTTCAGGAACTCTAAGCTTACACACTTGTTACAAGACTCATTAGGAGGAGATTCAAAGACACTCATGTTTGTACAGATCAGTCCTAATGAAAACGATTTGGGCGAGACAATTTGCTCTCTAAACTTTGCTAGTAGAGTAAGGGGAATAGAATTGGGCCCTCCAAAAAAACAGTGGGACACTATTGAACTTCTGAAACATAAACAGATGGCTGAGAAAACTAAACAAGAGCTAAAGCTGAAGGACTTTCAAATCAAGAAGATGGAGGAAACAATCCATGGCTTTGAGTCCAAAATGAAGGAAAAGGATCATAAAAACAAAGCTCTTCAAGATAAGGTCAAGGAACTGGAATCACAACTTATGATTGAGAGAAAGCTAGCGCGTCAACATGTAGACTCAAAGATAGCTGAGCAACATCAAATGAAGAATCAAGAAGAGCAAAACAATCCAATTTGGAGAGCAACACCACTTGCAAATCGACCATTAGCAACTCTCAAGAATTTTAATGATCCAGCTAAACCTTTAACCGAGAACAACATCTTAAAACCTTACAATATACCCTTTTCTACAATAGAAAGCTCCATTGAGTGTATTGATCACAATGAGAAAGAAAACAACCCCGACATGGCCGATAACAAATCACTACTTCCAAAAAAGACATCAAGAGCTTCAATGTGCACAATGACACCGCGCGTTGTTCCTTCGGCAACTATTTCAAGAAGAAACTCTTTGATTCCACTCCCAAACTTAACACATTTTCAATCAACACCATTCATACCAAAGTTATCAAACCAAGAAGTAAATGAGGAATCAGAAACCTCACAAGAGAGTCCTAAAGAAGTTAAAAGTGGCGTGAAGAAGATAGGTAGCATACTAAGAAGAAGCATACATAAGAAAGGTCAAGGGAGGTCTCCATTACAACAGCATATGAGAAAAGTTGGTGGTGTAAATGTAGGGATGGAGAAAGTGAGAGTTTCTATTGGAAGTAGAGGGAAATTGGCACAAAGGGGGGTGCAGGTTGGAAATGGTAGAAGAGGTGGGGGTGCTAAAGAGATTCAACAGAAGAATAGTCATAAGGACAAGGAAAGAGGATGGATATAA 3054 0.3972 MEDNEWNHYDPLLLTDVSFQQQQTISTSVSQLSLSSLNSAMEADPQSCGGNPSYGLSPENESFERNSLQFDDPIVKNLVDGRSILGYSMNSPDLVICSSSPDIAGISYCDSPEILKSKNCFNLDSSMELSLENGINASEVEVCNVHKTPTVKFSNLCQTIEPEEELLSPEASFELHPPPITNDESPRDYSLRDNEMLEDARVSQEAELECSEDVEDIMVEEKFLKLKRDFECQRKELAVTRRELGELKKENQQKSSECHEALKSLKELQNELMRKSMHVGSLAFAIEGQVKEKSKWFISLRDLTRKLKIMKMEHMKLLEEAEAYKKYEADISEFGVIIKSKMNEQLASHEDLKSKYIEGAKVQKELYNKVLELRGNIRVFCRCRPLNAEEIKGGAAMALDFDSAKDGELTVMSNGSPKRTFKFDAVFGPQVEQADIFEDTVPFATSVLDGYNVCIFAYGQTGTGKTFTMEGTEDARGVNFRTLEKMFDIIKERQSLYRYDISVSVLEVYNEQIRDLLVSGNHPGMSGKRLEIRQSGEGMHIPGLVEAHVNNMTEVWEVLQTGSNARAVSSTNANEHSSRSHCIHCVMVKGENLLNGEHTRSKLWLVDLAGSERVAKTEVQGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLGETICSLNFASRVRGIELGPPKKQWDTIELLKHKQMAEKTKQELKLKDFQIKKMEETIHGFESKMKEKDHKNKALQDKVKELESQLMIERKLARQHVDSKIAEQHQMKNQEEQNNPIWRATPLANRPLATLKNFNDPAKPLTENNILKPYNIPFSTIESSIECIDHNEKENNPDMADNKSLLPKKTSRASMCTMTPRVVPSATISRRNSLIPLPNLTHFQSTPFIPKLSNQEVNEESETSQESPKEVKSGVKKIGSILRRSIHKKGQGRSPLQQHMRKVGGVNVGMEKVRVSIGSRGKLAQRGVQVGNGRRGGGAKEIQQKNSHKDKERGWI 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03145 1017 SMART kinesin_4 374 709 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g03145 1017 Pfam Kinesin motor domain 382 701 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g03145 1017 Coils Coil 722 777 - -
Trre16g03145 1017 Gene3D Kinesin motor domain 371 745 IPR036961 -
Trre16g03145 1017 MobiDBLite consensus disorder prediction 978 1017 - -
Trre16g03145 1017 ProSitePatterns Kinesin motor domain signature. 601 612 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre16g03145 1017 FunFam kinesin-like protein KIN-14R 321 703 - -
Trre16g03145 1017 PRINTS Kinesin heavy chain signature 651 672 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g03145 1017 PRINTS Kinesin heavy chain signature 602 620 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g03145 1017 PRINTS Kinesin heavy chain signature 450 471 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g03145 1017 PRINTS Kinesin heavy chain signature 571 588 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g03145 1017 Coils Coil 230 271 - -
Trre16g03145 1017 PANTHER KINESIN-LIKE PROTEIN KLP-3 200 899 IPR027640 GO:0003777|GO:0007018
Trre16g03145 1017 Coils Coil 300 320 - -
Trre16g03145 1017 ProSiteProfiles Kinesin motor domain profile. 376 701 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g03145 1017 MobiDBLite consensus disorder prediction 1002 1017 - -
Trre16g03145 1017 MobiDBLite consensus disorder prediction 41 61 - -
Trre16g03145 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 739 IPR027417 -
Trre16g03145 1017 CDD KISc_C_terminal 374 703 - -
Trre16g03145 1017 MobiDBLite consensus disorder prediction 915 936 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03145 Trre-Chr16 27701589 27706761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03145 244 728 Calmodulin-binding Proteins AT5G65930 35.938 9.05e-79 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03145 K10406 - gmx:100817247 1501.11