Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03144 ATGGAAGAACCAACATTTCTATTCCCACCCCCAGACTCCGACCTTGACCTCAGTTTCACAAGCACAACCACCGACCGCACTTTCACCTCCTCCTCCGCTCGCACCAGTTTAGCCCGCACAAGCAGTCTCGCTCTCAGCTTCAACGACCGTCTTTCAACCGCTTCCGCCGCTGCAACAGACACTTTTTCTTCTGCCATCATCCGCCGTCCTCACCGCAGTTCTGATCCAAACTGGACTGCTATCAAGGCTGCAACAAATCTCTCCTCTGATGGACGTCTTCATCTCCGTCATTTAAAGCTTCTCCGTCATCTTGGCTCCGGTGACCTCGGCCGTGTTTTTCTCTGTCGCCTCCGTGATTACGACGGCGCAAATTTTGCACTTAAGGTTGTTGATAAAGATCTTCTTACTCCTAAGAAATTCTCTCACGCGGAAACGGAGGCGGAGATTCTTCACGCGCTTGATCATCCTTTTCTCCCCACACTATACGCGCGTATTGACGTCTCTCATTACACGTGCCTCCTTATAGATTATTGTCCGGGCGGTGATCTCCACTCTCTCCTCCGAAAACAGCCGGGAAACCGACTCACACTCTCGGCGGCACGTTTTTTCGCCGCCGAGATTCTTGTTGCACTGGAGTATCTTCACGCACTTGGTGTTGTGTATCGTGACTTAAAACCTGAGAATGTGCTTCTACGTGAAGATGGACATGTCATGCTTTCTGATTTTGACCTTTGCTTTAAGGTTGACGTGGAACCTACTTTCGAGTGTTGTACCGTTCAAAAACCCCATGTGGGTCCCACTTATGGTTGTTTCGGTTATAATGGATCAAGATCTCCCGATTCTTGTGGGCAAGTAGTTACGGAGTTTGTTGCCGAACCAACTACGGCGTTTTCACGGTCGTGTGTTGGAACCCACGAGTATTTAGCACCAGAGCTTGTTTCGGGTAACGGTCACGGTAACGGTGTGGATTGGTGGGCTTTTGGGGTTTTTATTTATGAGTTGCTATATGGAACAACACCGTTTAAGGGGTGTAGCAAGGAGAACACACTGCGTAATATAGCATCTAATAAGGATGTGAAGTTTCACGTGGCGGAGAGTGAAGAGGTAGGGATGGTAGAAGCGAGGAATTTGATAGAGAAATTGTTAGTAAAGGATCCTAAGAAGAGGTTAGGGTGTTTTAGAGGTGCGACCGAGGTTAAACAACACCCTTTTTTTGACGGAATTAAGTGGCCCTTGATTAGGACCTATAAGCCACCTGAAGTGAAGGGACTATTGAGGAAGAAAAAATCGGATTCACATTTGTGTCATGTGGCTAGTAAGAAGAAGAGAGGGTGGTGGAAGAAGCTTGGATGTGTATTGAAAAATAAAGGAGCTAGATTTGATTTACTTTCAAACTATAGTAATAATAATCATTATTGTTATGTTAATAATAATAGTAAGGTTAGGTAA 1449 0.4617 MEEPTFLFPPPDSDLDLSFTSTTTDRTFTSSSARTSLARTSSLALSFNDRLSTASAAATDTFSSAIIRRPHRSSDPNWTAIKAATNLSSDGRLHLRHLKLLRHLGSGDLGRVFLCRLRDYDGANFALKVVDKDLLTPKKFSHAETEAEILHALDHPFLPTLYARIDVSHYTCLLIDYCPGGDLHSLLRKQPGNRLTLSAARFFAAEILVALEYLHALGVVYRDLKPENVLLREDGHVMLSDFDLCFKVDVEPTFECCTVQKPHVGPTYGCFGYNGSRSPDSCGQVVTEFVAEPTTAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFIYELLYGTTPFKGCSKENTLRNIASNKDVKFHVAESEEVGMVEARNLIEKLLVKDPKKRLGCFRGATEVKQHPFFDGIKWPLIRTYKPPEVKGLLRKKKSDSHLCHVASKKKRGWWKKLGCVLKNKGARFDLLSNYSNNNHYCYVNNNSKVR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03144 482 ProSiteProfiles Protein kinase domain profile. 98 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03144 482 SMART serkin_6 98 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03144 482 Gene3D Transferase(Phosphotransferase) domain 1 298 421 - -
Trre16g03144 482 SUPERFAMILY Protein kinase-like (PK-like) 77 421 IPR011009 -
Trre16g03144 482 Gene3D Transferase(Phosphotransferase) domain 1 182 258 - -
Trre16g03144 482 CDD STKc_phototropin_like 105 421 - -
Trre16g03144 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Trre16g03144 482 FunFam Serine/threonine-protein kinase OXI1 182 250 - -
Trre16g03144 482 FunFam Serine/threonine-protein kinase OXI1 296 423 - -
Trre16g03144 482 PANTHER FLIPPASE KINASE 1-RELATED 35 426 - -
Trre16g03144 482 Gene3D Phosphorylase Kinase; domain 1 97 181 - -
Trre16g03144 482 Pfam Protein kinase domain 100 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03144 Trre-Chr16 27686037 27687485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03144 1 482 AGC Kinase Gene Family AT3G14370 63.765 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre16g03144 Pkinase 1.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03144 - - lja:Lj0g3v0200189.1 687.952