Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03142 ATGTACACAAACCAGTTGAATGGAACAATTCCACCTGAGTTAGGAAACTGTACTAATGCTATTGAGATTGATCTATCTGAAAACCATTTGATTGGTATCATTCCAAAAGAGTTAGGTCAAATCTCTAATCTTACCTTGCTTCACCTATTTGAAAACAATTTGCAGGGTCATATTCCAAAGGAGCTTGGAAATTTGAAGCTGCTGAGGAATTTAGATTTGTCATTGAACAACTTAACAGGTATAATTCCGTTTGAGTTTCAAAATCTTAAACTCATGGAGGATTTGCAGCTATTTGATAATCAACTTGAAGGTGTGATTCCACCTCATCTTGGAGCATTTAGAAACCTTACTATTCTTGATATATCTTCAAATAATCTTGTCGGTATGATACCAAACCGTCTTTGTGAATATCAGAAGCTTCAATTCCTTAGCCTTGGATCAAATAGGCTCTTTGGAAATATTCCTTATAGATTGAAAACTTGTAAGTCACTTGTGCAGTTAATGCTTGGGGGTAATCTTTTGACAGGAAGTTTACCTGTTGAATTGTATGAACTTAATAATCTTACCGCGCTCGAGCTTCATCAGAACAGATTCTCCGGGCTGGTTAGCCCTGGAATTGGTAAACTTGGGAATCTAGAGAGGCTTCACTTGTCAGATAATTATTTTTCAGGTCATCTACCTTCTGAGATTGGAAATTTGTCAAGCCTTGTAACATTCAATGTTTCGTCTAACCGTTTCAGTGGAAGTATTCCACACGAGTTAGGAAACTGTGTGAATCTGCAGAGACTTGATCTCAGCAGGAATAAGTTTACTGGTATGCTTCCAAGTTCAATTGGAAATCTTGTGAATTTGGAGCTACTAAAGGTTTCTGATAATATGCTTTCTGGAGAAATACCGGGCACTTTGGGGGACCTTATTCGTCTAACCGATTTGGAGCTCGGTGGAAATCGGTTTTCAGGAAGCATCCCTTTTCATTTTGGAAGACTTTCTTCTCTTCAGATAGCACTAAACTTGAGTCACAACAATCTTTCTGGTACAATTCCTGATAGCTTAGGGAGCTTGCAAATGCTAGAATCACTTTACTTAAATGATAATCAACTTGTCGGAGAAATTCCTTCATCAATTGGTGACTTGCTTAGTCTTTTAGTATGCAATGTATCTAACAATAAGCTGATAGGAACTGTTCCTGACACAACCACATTTAGAAAGATGGATTTAACAAATTTTGCCGGGAACAACGGTTTGTGCCGTGAAGGTACTAATCACTGTCATCCATCTTTAGCTTCTTCTCATCACGCAAAGCCGATGAAAGACGGTTTATCAAGGGAACAGATAGTGAGTATTGTCTCTGGTGTGGTTGGTTTTGTGTCTCTGATTTTCATAGTTTGTATATGTTGGACTATGATGAGACGCCGCCACAGCAATTCTTTTGTTTCGATTGAAGAACAAACAAAGCCTCATGTTCTAGATAATAGCTATTACTTTCCAAAAGAAGGCTTCACTTACAATGATCTCTTGGAAGCTACTGGGAATTTTTCAGAAAGTGAAGTTATAGGAAGAGGAGCTTGTGGAACTGTCTACAGAGCTGTTATGAATGATGGTGAAGTTATTGCTGTTAAGAAACTGAATACACGCGGAGGAGAAGGAACAAGCATCGACCGAAGCTTCCTCGCAGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGCATGGTTTTTGTTATCATGACGATTCTAATCTTCTATTGTATCAATACATGGAAAATGGAAGCCTTGGTGAAAAACTTCATAATTCAAGTTCAAAAACATGTGAACTGGATTGGAACGTTAGATATAGAATAGCTCTAGGAGCAGCAGAAGGCTTATGCTATCTTCATTATGATTGTAAACCTCAAATCATTCATCGTGATATCAAATCGAACAATATTTTGCTTGATCAAAGTTTTCGGGCTCATGTTGGAGATTTTGGATTGGCAAAGTTGATTGATTTTTCATTATCAAAATCAATGTCTGCTGTTGCTGGATCATATGGCTATATTGCCCCAGAATATGCTTACACCATGAAGGTGACTGAAAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTTACCGGGAAGTCGCCAGTTCAACCATTGGAACAAGGTGGTGATTTAGTTAACTGGGTGAGAAGATCAATTCAAGCATCAGTGCCTACATCTGAATTATTTGATAAGAGATTGGATTTGAGTGAACAAAAGACTGTTGAAGAAATGTCTCTTATTCTTAAAATTGCACTGTTTTGCACCAGTTCATCTCCACTTAATAGGCCTACAATGAGAGAGGTAATTGCAATGTTGATTGATGCTAGGGAATATGTCAACCAATCACTAACCTCTCCTTCATCTGAATCTCCACTTGATGAAGATAAAAGTTCTTCTTCAAAAGATGGTGGTCTTGAGTTGTGA 2469 0.3799 MYTNQLNGTIPPELGNCTNAIEIDLSENHLIGIIPKELGQISNLTLLHLFENNLQGHIPKELGNLKLLRNLDLSLNNLTGIIPFEFQNLKLMEDLQLFDNQLEGVIPPHLGAFRNLTILDISSNNLVGMIPNRLCEYQKLQFLSLGSNRLFGNIPYRLKTCKSLVQLMLGGNLLTGSLPVELYELNNLTALELHQNRFSGLVSPGIGKLGNLERLHLSDNYFSGHLPSEIGNLSSLVTFNVSSNRFSGSIPHELGNCVNLQRLDLSRNKFTGMLPSSIGNLVNLELLKVSDNMLSGEIPGTLGDLIRLTDLELGGNRFSGSIPFHFGRLSSLQIALNLSHNNLSGTIPDSLGSLQMLESLYLNDNQLVGEIPSSIGDLLSLLVCNVSNNKLIGTVPDTTTFRKMDLTNFAGNNGLCREGTNHCHPSLASSHHAKPMKDGLSREQIVSIVSGVVGFVSLIFIVCICWTMMRRRHSNSFVSIEEQTKPHVLDNSYYFPKEGFTYNDLLEATGNFSESEVIGRGACGTVYRAVMNDGEVIAVKKLNTRGGEGTSIDRSFLAEISTLGKIRHRNIVKLHGFCYHDDSNLLLYQYMENGSLGEKLHNSSSKTCELDWNVRYRIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDQSFRAHVGDFGLAKLIDFSLSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGKSPVQPLEQGGDLVNWVRRSIQASVPTSELFDKRLDLSEQKTVEEMSLILKIALFCTSSSPLNRPTMREVIAMLIDAREYVNQSLTSPSSESPLDEDKSSSSKDGGLEL 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03142 822 Gene3D Ribonuclease Inhibitor 92 431 IPR032675 -
Trre16g03142 822 Gene3D Ribonuclease Inhibitor 3 88 IPR032675 -
Trre16g03142 822 Gene3D Transferase(Phosphotransferase) domain 1 591 811 - -
Trre16g03142 822 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 118 427 - -
Trre16g03142 822 ProSiteProfiles Protein kinase domain profile. 512 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03142 822 SMART serkin_6 512 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03142 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Trre16g03142 822 MobiDBLite consensus disorder prediction 797 822 - -
Trre16g03142 822 SMART LRR_typ_2 258 280 IPR003591 -
Trre16g03142 822 SMART LRR_typ_2 113 137 IPR003591 -
Trre16g03142 822 SMART LRR_typ_2 354 378 IPR003591 -
Trre16g03142 822 SMART LRR_typ_2 65 88 IPR003591 -
Trre16g03142 822 SMART LRR_typ_2 281 305 IPR003591 -
Trre16g03142 822 SMART LRR_typ_2 233 257 IPR003591 -
Trre16g03142 822 SMART LRR_typ_2 209 232 IPR003591 -
Trre16g03142 822 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 591 804 - -
Trre16g03142 822 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 172 788 - -
Trre16g03142 822 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 82 - -
Trre16g03142 822 Pfam Protein kinase domain 513 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03142 822 Gene3D Phosphorylase Kinase; domain 1 473 590 - -
Trre16g03142 822 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 476 590 - -
Trre16g03142 822 SUPERFAMILY Protein kinase-like (PK-like) 488 787 IPR011009 -
Trre16g03142 822 SUPERFAMILY L domain-like 3 411 - -
Trre16g03142 822 Pfam Leucine rich repeat 259 318 IPR001611 GO:0005515
Trre16g03142 822 ProSiteProfiles Leucine-rich repeat profile. 67 88 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03142 Trre-Chr16 27676838 27680449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03142 2 814 Receptor kinase-like Gene Family AT5G65700 39.018 3.27e-169 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre16g03142 Pkinase 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03142 - - gmx:100818311 1315.06