Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03128 ATGTCATCCTCTTCATTATCCTTGGACCACCTCCCTTCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACCAATCTTTTACCAGTCAACATGCGTGCATTGCTTCTTCCATCTCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTTGAGGAGATGCCAAACCCAGCTCCAAATTTTCTGATGAACCATACCAATGTACCAAATGAGTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCAAGGCCACCAATCATCAACAGACAGAAAAGGCAGAGAGTTCCTTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCATTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGATGGAGATGATCAGGTTCTTATGAAAGATGGAGGGTTTTATGCTTCAGCTAATCTTGGTGTTTCTCCCTACTAA 636 0.4513 MSSSSLSLDHLPSSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLEEMPNPAPNFLMNHTNVPNEFSMPPRTVADELPRPPIINRQKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQDGDDQVLMKDGGFYASANLGVSPY 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03128 211 CDD HMG-box_SF 127 163 - -
Trre16g03128 211 PANTHER PROTEIN YABBY 6-RELATED 1 183 IPR006780 GO:0007275
Trre16g03128 211 SUPERFAMILY HMG-box 118 166 IPR036910 -
Trre16g03128 211 Gene3D High mobility group box domain 120 170 IPR036910 -
Trre16g03128 211 Pfam YABBY protein 13 173 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03128 Trre-Chr16 27405991 27408811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03128 24 209 C2C2-YABBY Transcription Factor Family AT4G00180 55.502 1.90e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre16g03128 YABBY 5.6e-66 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03128 K25796 - gmx:100798441 379.022