Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03127 ATGTCATCCTCTTCATTATCCTTGGACCACCTCCCTTCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACCAATCTTTTACCAGTCAACATGCGTGCATTGCTTCTTCCATCTCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTTGAGGAGATGCCAAACCCAGCTCCAAATTTTCTGATGAACCATACCAATGTACCAAATGAGTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCAAGGCCACCAATCATCAACAGACCTCCAGAGAAAAGGCAGAGAGTTCCTTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCATTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGATGGAGATGATCAGGTTCTTATGAAAGATGGAGGGTTTTATGCTTCAGCTAATCTTGGTGTTTCTCCCTACTAA 642 0.4533 MSSSSLSLDHLPSSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLEEMPNPAPNFLMNHTNVPNEFSMPPRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQDGDDQVLMKDGGFYASANLGVSPY 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03127 213 Gene3D High mobility group box domain 120 171 IPR036910 -
Trre16g03127 213 FunFam Axial regulator YABBY 120 191 - -
Trre16g03127 213 CDD HMG-box_SF 129 165 - -
Trre16g03127 213 Pfam YABBY protein 13 175 IPR006780 GO:0007275
Trre16g03127 213 SUPERFAMILY HMG-box 119 168 IPR036910 -
Trre16g03127 213 PANTHER PROTEIN YABBY 6-RELATED 1 185 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03127 Trre-Chr16 27405991 27408811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03127 24 211 C2C2-YABBY Transcription Factor Family AT4G00180 58.852 9.14e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre16g03127 YABBY 3.9e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03127 K25796 - gmx:100798441 390.578