Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03126 ATGTCATCCTCTTCATTATCCTTGGACCACCTCCCTTCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACCAATCTTTTACCAGTCAACATGCGTGCATTGCTTCTTCCATCTCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTTCAGGAGGAGATGCCAAACCCAGCTCCAAATTTTCTGATGAACCATACCAATGTACCAAATGAGTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCAAGGCCACCAATCATCAACAGACAGAAAAGGCAGAGAGTTCCTTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCATTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGATGGAGATGATCAGGTTCTTATGAAAGATGGAGGGTTTTATGCTTCAGCTAATCTTGGTGTTTCTCCCTACTAA 639 0.4523 MSSSSLSLDHLPSSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLQEEMPNPAPNFLMNHTNVPNEFSMPPRTVADELPRPPIINRQKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQDGDDQVLMKDGGFYASANLGVSPY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03126 212 Gene3D High mobility group box domain 121 171 IPR036910 -
Trre16g03126 212 CDD HMG-box_SF 128 164 - -
Trre16g03126 212 Pfam YABBY protein 13 174 IPR006780 GO:0007275
Trre16g03126 212 PANTHER PROTEIN YABBY 6-RELATED 1 184 IPR006780 GO:0007275
Trre16g03126 212 SUPERFAMILY HMG-box 119 167 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03126 Trre-Chr16 27405991 27408811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03126 24 210 C2C2-YABBY Transcription Factor Family AT4G00180 55.238 1.57e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre16g03126 YABBY 3.1e-66 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03126 K25796 - gmx:100798441 374.4