Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03125 ATGTCATCCTCTTCATTATCCTTGGACCACCTCCCTTCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACCAATCTTTTACCAGTCAACATGCGTGCATTGCTTCTTCCATCTCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTTCAGGAGGAGATGCCAAACCCAGCTCCAAATTTTCTGATGAACCATACCAATGTACCAAATGAGTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCAAGGCCACCAATCATCAACAGACCTCCAGAGAAAAGGCAGAGAGTTCCTTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCATTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGATGGAGATGATCAGGTTCTTATGAAAGATGGAGGGTTTTATGCTTCAGCTAATCTTGGTGTTTCTCCCTACTAA 645 0.4543 MSSSSLSLDHLPSSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLQEEMPNPAPNFLMNHTNVPNEFSMPPRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQDGDDQVLMKDGGFYASANLGVSPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03125 214 PANTHER PROTEIN YABBY 6-RELATED 1 186 IPR006780 GO:0007275
Trre16g03125 214 FunFam Axial regulator YABBY 121 192 - -
Trre16g03125 214 MobiDBLite consensus disorder prediction 109 128 - -
Trre16g03125 214 CDD HMG-box_SF 130 166 - -
Trre16g03125 214 Gene3D High mobility group box domain 121 172 IPR036910 -
Trre16g03125 214 SUPERFAMILY HMG-box 120 169 IPR036910 -
Trre16g03125 214 Pfam YABBY protein 13 176 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03125 Trre-Chr16 27405991 27408811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03125 24 212 C2C2-YABBY Transcription Factor Family AT4G00180 58.571 4.58e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre16g03125 YABBY 2.3e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03125 K25796 - gmx:100798441 385.956