Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03116 ATGAACACATTTTCACATGTACCTCCGGGATTTCGTTTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTATTGTCTAAAAAGATTGATCTAGATGTCATCAAAGACGTCGATCTCTACAAAATTGAACCATGGGATCTACAAGAATTATGCAAAATAGGAAGTGATGAACAAAATGACTGGTATTTTTTTAGTCATAAGGATAAGAAATATCCAACAGGAACTCGAACGAATAGAGCGACAAAGGCAGGTTTCTGGAAAGCAACAGGAAGAGATAAGGCAATTTACTCGAAACAATTCCTAGTTGGAATGAGAAAGACTCTAGTGTTTTACAAAGGACGTGCCCCAAATGGACAAAAATCTGATTGGATCATGCATGAGTATCGCCTAGAAACTAATCAAAATGGAACTTCTCAGGAAGAAGGGTGGGTTGTTTGCAGGGTATTCAAGAAAAGAATGACAACAGTACAGAAAATGAGTGAGTATGATCAATCACCATGTAATTGGTATGAAGATCAAGTTTCCTTCATGCCTGATCTTGAATCTCCAACTTCAACTAATCCTCACCAAAATTATACTTCATCAACTTATCACTCCTGCAAACCAGAGCTTGAATTAATGCAATACCAACACATTGATCATGCTAATTTTATCCAACTTCCACATCTTGAAAGCTCCAAAATCACTCAATCAATTATCCCTTATAATAATCATGTTCATGCAAACAATAACATTAATGCACAACATATGCAATATTTGCATTACCATCAACAAAATCTTCACTCGATATACGGCGGCGGCGGTGGTGGGAGTAGTAGTACTGGTAATAATGATGAACAAGTTACTGATTGGAGAGTTCTTGATAAATTTGTTGCATCTCAGCTAAGTCATGAAGATAATAATAATAATCAAAAACATGTTTCTAATAAAGAAACTAGTTCTTTCTCTAATTCAGCAGCTATTCTTCAAGTGGCTGAACAAATTACTCTTCTTGCAAATGGATCCAAAAAGAATGAAGTTTCTGATGAACATGCTTCAACTTCTACCTCCAGTTGCCACATGGAACTATGGAAGTGA 1092 0.3608 MNTFSHVPPGFRFHPTDEELVDYYLRKKVLSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTSQEEGWVVCRVFKKRMTTVQKMSEYDQSPCNWYEDQVSFMPDLESPTSTNPHQNYTSSTYHSCKPELELMQYQHIDHANFIQLPHLESSKITQSIIPYNNHVHANNNINAQHMQYLHYHQQNLHSIYGGGGGGSSSTGNNDEQVTDWRVLDKFVASQLSHEDNNNNQKHVSNKETSSFSNSAAILQVAEQITLLANGSKKNEVSDEHASTSTSSCHMELWK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03116 363 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Trre16g03116 363 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Trre16g03116 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 293 - -
Trre16g03116 363 FunFam NAC domain-containing protein 16 160 - -
Trre16g03116 363 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Trre16g03116 363 MobiDBLite consensus disorder prediction 349 363 - -
Trre16g03116 363 MobiDBLite consensus disorder prediction 340 363 - -
Trre16g03116 363 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03116 Trre-Chr16 27341708 27346102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03116 1 363 NAC Transcription Factor Family AT1G12260 55.495 5.62e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g03116 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03116 - - gmx:100783529 494.582