Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03102 ATGGCAAAGGGTTGCTCCAGCAACAACTATGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTAGGGATTTCAAAGATTTCAAAAATCTTGACTAAAGTCACAAGTCCTGCAAAGAAGTCCCAGAATCGTCTTCCCAGACTAAAATTAAAGACTAATGATGAAGTGGAACCTAGGCGCTCTTCTCGTCCAAGAAACCAAGTTACGTCATACACCGAAGAGTTTGGCACAGACCTTCCAGATAGGAGTTCATATCTGCGGAAGAGGTCAAGGTCAAGTTCATCATCATGGGAAAGTTACGTTGCAAGGCCTCTAGAAGAAATCAAAGTAGCTACAAAACAAGAAAGAATTCGTGCTTATGAGGCTGCAGAGGCACTCCAAATCAATTTGCAGTCTTCGAAGCCATCATTTATCAAGTCAATGGTCCGGTCTCATGTTTATAGTTGTTTTTGGTTGGGTCTTCCTAGTAGATTTTGCGAGGAACACCTTCCAAGAACGGTGTATAACATGACTTTAGAGGATGAAGATGGCTCAGAGTATGATGCTGTTTACATTGGGAGTAGAAGTGGGCTAAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAATTGGATGATGGTGATGCACTTGTTTTTGAATTGGTTGAACCAGCAAGATTTAAGATTTATGTTGTTAGAGCATTTCCAAATATAGATGAAGAGGAAGAAGAAAACGATACTCTGGTGCAAGAAGAAAATATGGACACATCCAAAGCAACAAAAGTATCCAAGGCTACCTCTAACCGTGGATCAAAATCAAAGAAGACTAAAAAGCAAAAACATGTCATTGAAACGAAGGAATCAGAGAGTTCTGAAGAAAGCATGCCAGAAATTAACATTGGCAAAAAATTCAACCCAGAGAGGGTAATTCCGACTAGGAAAACTAGATCTTCTCGGATAGAAGTGCAAAAGAAGCCTCAACCGCCTACTAGTACTGACTCTGAGTCAAGCGAGGAACCAAAAATGCAAACACTGAAGAAAACTATTTCTTCTCAGAAAAAAATGCAAAAGACATCTGAAGTACCTACTACTCCTGAGCCAAAAGAGGAAGCACAAATTGAAATTGTGAAACGAAAAACTAGATCTTCTCAGAAAAAAATGCAAGAGATATCTGAAGTACCTACTACTCCTGAGCCAAAAAGGGAAACACAGATTGAAATTGTGAAACCAAAGACTAGATCTTCTCAGAAACAAATGCAAAAGATATCTGAAGTATCTACTGCTCTTGAGTCAAAAGAGGAAGCACAAGTTGAAACTGTGAAACCGAAGGCAGCTGCAAAGTTGTCAAACAAGACACAAAAGTCGAAAGAAGGTAATGATTGTGAAATTGATGAGTCAATAAATACTGAGCAGCTTCTTCCGAAAGATAATTTTGTTGAAACAGTCGATGCTAACATGAGTGAGAAGAAAGAACATGTTCAAGTTAATGATCTTGAGGCAGTGAAAGAAAAACCAGATGAAAAACCAAGCAAACGTGCCTCACAAATACCTCGAAAAAAATCAGCTCCTAAGTTTTTCAGAAAGAGAGCATAG 1590 0.3906 MAKGCSSNNYEEARKQRLEENKKRFEDLGISKISKILTKVTSPAKKSQNRLPRLKLKTNDEVEPRRSSRPRNQVTSYTEEFGTDLPDRSSYLRKRSRSSSSSWESYVARPLEEIKVATKQERIRAYEAAEALQINLQSSKPSFIKSMVRSHVYSCFWLGLPSRFCEEHLPRTVYNMTLEDEDGSEYDAVYIGSRSGLSGGWRAFALEHKLDDGDALVFELVEPARFKIYVVRAFPNIDEEEEENDTLVQEENMDTSKATKVSKATSNRGSKSKKTKKQKHVIETKESESSEESMPEINIGKKFNPERVIPTRKTRSSRIEVQKKPQPPTSTDSESSEEPKMQTLKKTISSQKKMQKTSEVPTTPEPKEEAQIEIVKRKTRSSQKKMQEISEVPTTPEPKRETQIEIVKPKTRSSQKQMQKISEVSTALESKEEAQVETVKPKAAAKLSNKTQKSKEGNDCEIDESINTEQLLPKDNFVETVDANMSEKKEHVQVNDLEAVKEKPDEKPSKRASQIPRKKSAPKFFRKRA 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03102 529 MobiDBLite consensus disorder prediction 408 432 - -
Trre16g03102 529 MobiDBLite consensus disorder prediction 514 529 - -
Trre16g03102 529 CDD B3_DNA 141 232 IPR003340 GO:0003677
Trre16g03102 529 MobiDBLite consensus disorder prediction 251 266 - -
Trre16g03102 529 SUPERFAMILY DNA-binding pseudobarrel domain 137 232 IPR015300 -
Trre16g03102 529 Coils Coil 8 28 - -
Trre16g03102 529 Pfam B3 DNA binding domain 143 230 IPR003340 GO:0003677
Trre16g03102 529 MobiDBLite consensus disorder prediction 481 513 - -
Trre16g03102 529 MobiDBLite consensus disorder prediction 241 467 - -
Trre16g03102 529 MobiDBLite consensus disorder prediction 53 68 - -
Trre16g03102 529 MobiDBLite consensus disorder prediction 369 385 - -
Trre16g03102 529 ProSiteProfiles B3 DNA-binding domain profile. 143 234 IPR003340 GO:0003677
Trre16g03102 529 MobiDBLite consensus disorder prediction 306 320 - -
Trre16g03102 529 MobiDBLite consensus disorder prediction 39 82 - -
Trre16g03102 529 Gene3D - 116 234 IPR015300 -
Trre16g03102 529 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 58 233 IPR044837 -
Trre16g03102 529 SMART B3_2 143 237 IPR003340 GO:0003677
Trre16g03102 529 MobiDBLite consensus disorder prediction 321 361 - -
Trre16g03102 529 MobiDBLite consensus disorder prediction 481 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03102 Trre-Chr16 26960554 26968413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03102 10 233 B3 DNA Binding Superfamily AT5G58280 50.598 1.63e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g03102 B3 2.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03102 - - cam:101498339 572.392