Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03090 ATGGAGGCCAGTGGCGGTGTTAGTGGTGGCGTTACGGTGGTGGGATCGGATGCTCCATCGGAGTACCATGTAGCTCCGAGAAACGACAACCAAACTCCGACAACTGGATCGGCGGTTCAGATTACTGCGGTGGTTCAAGGAGGTGTTCCACCGCAACCTCCGCCGTACACGGCGTTGGTAACGGCGTCGACGGCAGCTACACCGGTGCCAGAGAAGAAGAAGAGAGGACGGCCGAGAAAGTATCCACAAGACGGTTCAGCAACTGCGGCGCTGTCTCCAAAGCCAATATCTTCGTCTGCTCCGTTGCCGCCGGTGATCGATTTCACGGCGGAGAAACGTGCAAAAGTGCGGCCAGTTAGCTCGGTGAGCAAAGCTAAATTTGAGTTGGAAAATATAGGTGAATGGGCCCCTTGCTCAGTTGGTTCTAATTTCACACCCCACATCATTACTGTTAATGCTGGAGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCAAATGGTGTCATAAAAAGTGTCACACTTCGTCAACCCGATGCTTCTGGGGGCACATTGACATATGAGGGATTATTTGAAATTCTGTCTTTATCTGGTTCTTTCACGCCAAATGAAAGTGGAGGTACACGAAGCAGATCAGGTGGCATGAGTGTTTCTTTAGCAAGTCCTGATGGACGTGTTGTTGGTGGAGGAGTAGCTGGTTTGTTGGTGGCTGCAAGTCCAGTGCAGGTAGTGGTTGGTAGTTTTATGGCAGGAAACCAACATGAGCAGAAGCCAAGAAATCAGAAACATGATATGATATCAACTGTGACTTCTGCTGCTGCTGTTGTTCCCCTCCCTACTCTTGATCCAGTACCTATTCTATCATCAGTATCTTCCTTTCGCGGAGATAATTGGTCTGCTGTGCAAGCACCAGATGCAAAGGATAAGCCTGCTGCTGACATTAATGTGTCACTTCCTGTAGGCTAG 999 0.4915 MEASGGVSGGVTVVGSDAPSEYHVAPRNDNQTPTTGSAVQITAVVQGGVPPQPPPYTALVTASTAATPVPEKKKRGRPRKYPQDGSATAALSPKPISSSAPLPPVIDFTAEKRAKVRPVSSVSKAKFELENIGEWAPCSVGSNFTPHIITVNAGEDVTMKVISFSQQGPRAICILSANGVIKSVTLRQPDASGGTLTYEGLFEILSLSGSFTPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFMAGNQHEQKPRNQKHDMISTVTSAAAVVPLPTLDPVPILSSVSSFRGDNWSAVQAPDAKDKPAADINVSLPVG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03090 332 ProSiteProfiles PPC domain profile profile. 141 280 IPR005175 -
Trre16g03090 332 MobiDBLite consensus disorder prediction 1 98 - -
Trre16g03090 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 263 - -
Trre16g03090 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 259 IPR005175 -
Trre16g03090 332 CDD DUF296 145 236 IPR005175 -
Trre16g03090 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 280 IPR039605 GO:0003680
Trre16g03090 332 FunFam AT-hook motif nuclear-localized protein 1-like 146 277 - -
Trre16g03090 332 MobiDBLite consensus disorder prediction 25 42 - -
Trre16g03090 332 Gene3D - 146 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03090 Trre-Chr16 26896119 26900516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03090 1 329 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.101 1.73e-120 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03090 - - gmx:100801730 474.937