Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03087 ATGGCTGCAGCCTCTAATCAATCCTCGGCCACTTCAGAAAATATTTCACACAAAGTTTCTGAAAAAGAGAACGACGTCAACAAAAACGAGGTGACAATGAAGGAAAAAGAAGTTATAATATCTCAACCTTCAAAAAGCGATAACAATTTGCTTCTTGATTTCGTCAAGCTCTCTAATGATGATTTGATTCCTATGTCAAATGTGAAGGAATATGATTTTTTCACCCCCTCGAAAGACTTGGGGGCGAGTTCATCTTTATTACCTTGGGCTAATAATAAGTCCAATAATGAAGAGAACACAAAAGATAAATCTTTTGATTCGAGTAGTACTTTCTCTTGCAACTTTTGCAAGAGACAGTTTTCTTCTTCACAAGCTTTAGGAGGGCATCAAAATGCTCATAAGCGTGAACGCGCACTTGCAAAGCATCGCCAAGAGATTCAAAATGGTTTTGGAACCCCTCATTTTCCTTTTCCTTACTACACAAGTTATCCACGTCTTCCTTCATTTGGATCTTATAATAAAGCACTTGGAATTAGGATGGACTCCATGATTCACAAGCCAAGCTATTCATGGATTCCGCCTCCTCATTATAAGTTCGATTCGACTCCTAAGTGGACACCGATGCAAGAGATGAGAAACTTTTCTTCATTTGATAGATTGAAGATCGAGAGTCTTAATGCAAATAAAGAAAACAGTGCAACTCCAATTTCGACGAATAATAAGATGAAATTAGAGGTTGGAGAGTCTTCGATAAATGTTGATACGAAGTCAAAGTCAAACGTAGACAAATCAACTGTAGTTGTCAGGGGTAGTAATCATGATACCGATAAGGAAGAAGAAGCCTCCGACTCTGAATCTACAAAGCTTGATTTGTCGCTTAAGCTTTAA 888 0.3795 MAAASNQSSATSENISHKVSEKENDVNKNEVTMKEKEVIISQPSKSDNNLLLDFVKLSNDDLIPMSNVKEYDFFTPSKDLGASSSLLPWANNKSNNEENTKDKSFDSSSTFSCNFCKRQFSSSQALGGHQNAHKRERALAKHRQEIQNGFGTPHFPFPYYTSYPRLPSFGSYNKALGIRMDSMIHKPSYSWIPPPHYKFDSTPKWTPMQEMRNFSSFDRLKIESLNANKENSATPISTNNKMKLEVGESSINVDTKSKSNVDKSTVVVRGSNHDTDKEEEASDSESTKLDLSLKL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03087 295 MobiDBLite consensus disorder prediction 85 106 - -
Trre16g03087 295 MobiDBLite consensus disorder prediction 1 15 - -
Trre16g03087 295 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Trre16g03087 295 Gene3D Classic Zinc Finger 91 151 - -
Trre16g03087 295 SUPERFAMILY beta-beta-alpha zinc fingers 109 138 IPR036236 -
Trre16g03087 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Trre16g03087 295 MobiDBLite consensus disorder prediction 269 295 - -
Trre16g03087 295 MobiDBLite consensus disorder prediction 252 295 - -
Trre16g03087 295 MobiDBLite consensus disorder prediction 252 268 - -
Trre16g03087 295 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 295 IPR044246 GO:0009788
Trre16g03087 295 Pfam C2H2-type zinc finger 111 135 - -
Trre16g03087 295 MobiDBLite consensus disorder prediction 16 30 - -
Trre16g03087 295 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03087 Trre-Chr16 26832274 26833161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03087 104 188 C2H2 Transcription Factor Family AT5G10970 48.936 3.55e-19 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g03087 zf-C2H2_6 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03087 - - tpra:123886838 427.172